The scripts and input files that accompany this demo can be found in the
demos/protocol_captures
directory of the Rosetta weekly releases.
This is a protocol capture, and represents the protocol at a fixed point in time. It may not work with the current version of Rosetta.
KEYWORDS: UTILITIES GENERAL
Rhiju Das, rhiju@stanford.edu
Rhiju's live demo on hacking code [creating a minimized helix for arbitrary sequence]
How not to code [renamed by Charlie & Rich to: Iron Chef Rosetta 1, Live Demo with Rotating Knives] Rhiju Das Tuesday Aug. 3, 2010
A 20-minute attempt to demystify writing C++ protocols in mini.
~/src/mini/bin/protein_helix_assemble.macosgccrelease -database ~/minirosetta_database/ -seq MRGSHHHHHHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIRP
Above is a CASP target that is mostly helical (obviously the His-tag in the front is not, but hey I only had 20 minutes).
The right Rosetta version:
https://svn.rosettacommons.org/source/branches/das_lab/mini Revision: 36561
The above is the Das lab branch, but I think the only thing I used from it is a function clear_conformation_viewers(), which you can comment out.
I think you can compile this in trunk if you just copy the file:
src/apps/pilot/rhiju/protein_helix_assemble.cc
to your pilot directory, and then make sure scons knows about it, in the file:
src/pilot_apps.src.settings.all