The scripts and input files that accompany this demo can be found in the
demos/protocol_captures directory of the Rosetta weekly releases.
This is a protocol capture, and represents the protocol at a fixed point in time. It may not work with the current version of Rosetta.
bcl svn revision: 4434 The three cone model parameters can be calculated from multiple mutants each having multiple relaxed structures. The command line given below will calculate the statistics for the pdbs of the two mutants provided in the inputs directory. bin/bcl.exe CalculateConeModelParameters -list_of_pdb_lists input/pdb_lists.ls -aaclass AAComplete -prefix calc_params_ -sl_cb_sl_max_angle 0 20 9 sl_cb_sl_max_angle.histogram -sleffective_cb_ca_angle 0 20 9 sleffective_cb_ca_angle.histogram -sleffective_cb_distance 0 1 10 sleffective_cb_distance.histogram -use_degrees -parameter_table_filename out_summary.table > & calc_params.log & The outputted files are histograms of the statistics for the three parameters as well as a summary file (out_summary.table).