The scripts and input files that accompany this demo can be found in the
demos/protocol_captures directory of the Rosetta weekly releases.
This is a protocol capture, and represents the protocol at a fixed point in time. It may not work with the current version of Rosetta.
rosetta svn revision 33365 The standard relaxation protocols with membrane flags can be used. The mtssl parameter file needs to be provided. The command line below will relax the double mutant MSBA structure provided in the inputs directory. bin/relax.linuxgccrelease -database $PATH_TO_ROSETTA_DATABASE -in:file:s input/msba_mtssl_mutant_start_structure.pdb -out:file:fullatom -in:file:extra_res_fa ../input/R1A.params -out:prefix mem_relax_ -run::constant_seed -run::jran 12345 -nstruct 1 -relax:membrane -membrane:normal_cycles 100 -membrane:normal_mag 15 -membrane:center_mag 2 -file:spanfile input/msba.span > & mem_relax.log &