PlaceFragments.cc File Reference

mover for pulling fragments into a pose so that they can be aligned onto stubs or other segements More...

#include <protocols/seeded_abinitio/PlaceFragments.hh>
#include <protocols/seeded_abinitio/PlaceFragmentsCreator.hh>
#include <utility/string_util.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/vector1.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/filters/BasicFilters.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/picking_old/vall/util.hh>
#include <core/fragment/IndependentBBTorsionSRFD.hh>
#include <core/fragment/util.hh>
#include <protocols/forge/build/Interval.hh>
#include <protocols/jd2/parser/BluePrint.hh>
#include <protocols/forge/build/BuildInstruction.hh>
#include <protocols/forge/build/BuildManager.hh>
#include <protocols/forge/build/SegmentInsert.hh>
#include <protocols/forge/components/VarLengthBuild.hh>
#include <protocols/forge/methods/pose_mod.hh>
#include <core/fragment/FrameIteratorWorker_.hh>
#include <core/fragment/OrderedFragSet.hh>
#include <core/fragment/picking_old/FragmentLibraryManager.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/model_quality/rms.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/tag/Tag.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::seeded_abinitio

Functions
static thread_local basic::Tracer	protocols::seeded_abinitio::TR ("protocols.seeded_abinitio.PlaceFragments")
utility::vector1< core::Size >	protocols::seeded_abinitio::parse_residues (pose::Pose &pose, std::string resid)
	adjustment since parse time specified residues are different numbered than run time residues More...

Detailed Description

mover for pulling fragments into a pose so that they can be aligned onto stubs or other segements

Author

Eva-Maria Strauch (evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)