#include <protocols/toolbox/pose_manipulation/pose_manipulation.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueProperties.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/util.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/id/AtomID_Map.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh>
#include <protocols/loops/Loops.hh>
#include <basic/Tracer.hh>
#include <core/types.hh>
#include <core/chemical/VariantType.hh>
#include <core/pose/util.hh>
#include <utility/vector1.hh>
#include <core/pose/util.tmpl.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

	protocols::toolbox

	protocols::toolbox::pose_manipulation

Functions
static thread_local basic::Tracer	protocols::toolbox::pose_manipulation::TR ("protocols.toolbox.pose_manipulation")

static thread_local basic::Tracer	protocols::toolbox::pose_manipulation::TR_DI ("protocols.toolbox.pose_manipulation.insert_pose_into_pose")

void	protocols::toolbox::pose_manipulation::construct_poly_ala_pose (core::pose::Pose &pose, utility::vector1< core::Size > const &positions, bool keep_pro, bool keep_gly, bool keep_disulfide_cys)
	puts in ala residues at the positions specified in the 'positions' input array More...

void	protocols::toolbox::pose_manipulation::construct_poly_uniq_restype_pose (core::pose::Pose &pose, utility::vector1< core::Size > const &positions, core::chemical::ResidueType const &restype, bool keep_pro, bool keep_gly, bool keep_disulfide_cys)
	allows construction of a polymer of any residue type More...

void	protocols::toolbox::pose_manipulation::construct_poly_XXX_pose (std::string const &aa, core::pose::Pose &pose, utility::vector1< core::Size > const &positions, bool keep_pro, bool keep_gly, bool keep_disulfide_cys)
	puts in XXX residues at the positions specified in the 'positions' input array More...

void	protocols::toolbox::pose_manipulation::remove_non_protein_residues (core::pose::Pose &pose)
	deletes all nonprotein residues from a pose More...

void	protocols::toolbox::pose_manipulation::add_chainbreaks_according_to_jumps (core::pose::Pose &pose)
	adds chainbreak residue types depending on fold tree jumps More...

void	protocols::toolbox::pose_manipulation::add_chainbreaks_according_to_jumps (core::pose::Pose &pose, utility::vector1< core::Size > const &no_cutpoint_residues)

void	protocols::toolbox::pose_manipulation::remove_chainbreaks_according_to_jumps (core::pose::Pose &pose)
	removes chainbreak residue types depending on fold tree jumps More...

core::Real	protocols::toolbox::pose_manipulation::superimpose_pose_on_subset_CA (core::pose::Pose &pose, core::pose::Pose const &ref_pose, utility::vector1< core::Size > const &positions, int const offset=0)
	superimposes one pose onto the other at the positions specified and More...

Namespaces

Functions