AlignmentClustering.hh File Reference

Divide input alns into clusters based on gdtmm comparison of partial models. Uses the top e-value or hh-value sample as the cluster center. More...

#include <protocols/comparative_modeling/AlignmentClustering.fwd.hh>
#include <core/types.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <map>
#include <core/sequence/SequenceAlignment.fwd.hh>
#include <utility/vector1.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/Pose.fwd.hh>

Classes
class	protocols::comparative_modeling::AlignmentCluster
class	protocols::comparative_modeling::AlignmentClustering

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::comparative_modeling

Detailed Description

Divide input alns into clusters based on gdtmm comparison of partial models. Uses the top e-value or hh-value sample as the cluster center.

Author

TJ Bcunette