LoopRemodel.cc File Reference

Parseable class to run loop perturbation or refinement between a given loop between start/end (inclusive). Intended to sample loop conformations at an interface. More...

#include <protocols/protein_interface_design/movers/LoopRemodel.hh>
#include <protocols/protein_interface_design/movers/LoopRemodelCreator.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_mover/perturb/LoopMover_CCD.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_CCD.hh>
#include <protocols/loops/loop_mover/perturb/LoopMover_KIC.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_KIC.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Loops.hh>
#include <utility/tag/Tag.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/forge/methods/util.hh>
#include <protocols/forge/remodel/RemodelLoopMover.hh>
#include <protocols/forge/methods/fragment_functions.hh>
#include <protocols/protein_interface_design/movers/SaveAndRetrieveSidechains.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/OperateOnCertainResidues.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FrameIteratorWorker_.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/picking_old/vall/util.hh>
#include <core/fragment/picking_old/FragmentLibraryManager.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/ResidueType.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/kinematics/Jump.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <protocols/simple_moves/DesignRepackMover.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_interface_design
	protocols::protein_interface_design::movers

Functions
static thread_local basic::Tracer	protocols::protein_interface_design::movers::TR ("protocols.protein_interface_design.movers.LoopRemodel")

Detailed Description

Parseable class to run loop perturbation or refinement between a given loop between start/end (inclusive). Intended to sample loop conformations at an interface.

Author

Jacob Corn (jecor.nosp@m.n@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)