ThreadingMover.cc File Reference

method declarations for ThreadingMover. More...

#include <protocols/comparative_modeling/util.hh>
#include <protocols/comparative_modeling/ThreadingMover.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loop_mover/LoopMover.hh>
#include <protocols/loops/LoopMoverFactory.hh>
#include <core/types.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/conformation/Residue.functions.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/fragment/FragSet.fwd.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID_Mask.fwd.hh>
#include <core/id/NamedAtomID.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/util.hh>
#include <core/pack/optimizeH.hh>
#include <core/pack/pack_missing_sidechains.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <string>
#include <basic/options/option.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/pose/util.tmpl.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::comparative_modeling

Functions
static thread_local basic::Tracer	protocols::comparative_modeling::tr ("protocols.comparative_modeling.threading")

Detailed Description

method declarations for ThreadingMover.

Author

James Thompson