ResiduePairJump.cc File Reference

a class to create jump transform from a pair of residues More...

#include <protocols/jumping/ResiduePairJump.hh>
#include <core/chemical/AtomICoor.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/JumpSRFD.hh>
#include <core/fragment/JumpingFrame.hh>
#include <core/graph/Graph.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSetFactory.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <numeric/conversions.hh>
#include <numeric/xyzVector.hh>
#include <utility/exit.hh>
#include <string>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::jumping

Detailed Description

a class to create jump transform from a pair of residues

This class is to create possible jump transforms between a pair of residues when their sidechains are locked in certain geometry constraints. It starts from the predefined constraints and takes backbone-independent rotamer conformation into account and reversely generate their backbone positions. Then a jump transform is measured.

Author

Chu Wang