SeedSetupMover.cc File Reference

mover to set up packer task and movemap for seededabinitio More...

#include <protocols/seeded_abinitio/SeedSetupMover.hh>
#include <protocols/seeded_abinitio/SeedSetupMoverCreator.hh>
#include <protocols/seeded_abinitio/SeededAbinitio_util.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <basic/datacache/DataMap.hh>
#include <boost/foreach.hpp>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <protocols/toolbox/task_operations/RestrictChainToRepackingOperation.hh>
#include <protocols/toolbox/task_operations/PreventChainFromRepackingOperation.hh>
#include <protocols/toolbox/task_operations/PreventResiduesFromRepackingOperation.hh>
#include <protocols/toolbox/task_operations/RestrictResiduesToRepackingOperation.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/Tracer.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/scoring/Interface.hh>
#include <core/pose/Pose.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Conformation.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/OptionKeys.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::seeded_abinitio

Functions
static thread_local basic::Tracer	protocols::seeded_abinitio::TR ("protocols.seeded_abinitio.SeedSetupMover")
bool	protocols::seeded_abinitio::is_part (utility::vector1< core::Size > vec, core::Size pos)
void	protocols::seeded_abinitio::define_movemap_chains (core::pose::Pose &pose, core::kinematics::MoveMapOP &movemap, protocols::loops::Loops &seeds, bool chi_chain1, bool chi_chain2, bool interface_chi1, bool, core::Real interface_distance_cutoff)
utility::vector1< core::Size >	protocols::seeded_abinitio::adjust_des_residues (pose::Pose &pose, std::string design_residues)
	adjustment since parse time specified residues are different numbered than run time residues More...

Detailed Description

mover to set up packer task and movemap for seededabinitio

Author

Eva-Maria Strauch (evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)