MotifDnaPacker.cc File Reference

#include <protocols/motifs/MotifDnaPacker.hh>
#include <protocols/motifs/MotifDnaPackerCreator.hh>
#include <protocols/dna/typedefs.hh>
#include <protocols/dna/DnaInterfacePacker.hh>
#include <protocols/dna/DnaInterfaceFinder.hh>
#include <protocols/dna/DnaDesignDef.hh>
#include <protocols/dna/util.hh>
#include <protocols/dna/PDBOutput.hh>
#include <protocols/dna/DnaChains.hh>
#include <protocols/dna/RestrictDesignToProteinDNAInterface.hh>
#include <protocols/dna/WatsonCrickRotamerCouplings.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/motifs/motif_utils.hh>
#include <protocols/motifs/MotifSearch.hh>
#include <protocols/toolbox/rotamer_set_operations/SpecialRotamerRotSetOps.hh>
#include <protocols/motifs/Motif.hh>
#include <core/types.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Residue.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/operation/OperateOnCertainResidues.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/dna/BasePartner.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/keys/motifs.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/string.functions.hh>
#include <vector>
#include <iostream>
#include <sstream>

Namespaces
	ObjexxFCL
	Application level code for relax-type protocols.
	ObjexxFCL::format
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::motifs

Functions
static thread_local basic::Tracer	protocols::motifs::TR ("devel.motifs.MotifDnaPacker")