standard_mains.hh File Reference

Main methods that implement the typical running patterns for executables. More...

#include <core/pose/Pose.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <core/types.hh>
#include <protocols/jobdist/Jobs.fwd.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::jobdist

Functions
void	protocols::jobdist::register_options_universal_main ()
	Handles loading and writing of silent files and or PDB files - superseeds the bottom two functions. More...
int	protocols::jobdist::universal_main (protocols::moves::Mover &mover, float thinout_factor)
int	protocols::jobdist::main_plain_mover (protocols::moves::Mover &mover, bool random_permutation=true)
	Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files. Supplied Mover is used to transform input structure into output structure. More...
int	protocols::jobdist::main_plain_pdb_mover (protocols::moves::Mover &mover, core::scoring::ScoreFunctionOP scorefxn)
	Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files. Supplied Mover is used to transform input structure into output structure. More...
utility::vector1< BasicJobOP >	protocols::jobdist::load_s_and_l ()
	Reads inputs from -s/-l/-nstruct and writes atomtree_diff silent files. Supplied Mover is used to transform input structure into output structure. undefined - commenting out to make pyrosetta compile... More...
std::string	protocols::jobdist::get_output_tag (core::pose::Pose const &pose)
	Helper function to safely get current output tag that's cached in Pose. More...
std::map< std::string, core::Real >	protocols::jobdist::get_score_map (core::pose::Pose const &pose)
	Helper function to safely get score_map that's cached in Pose. More...

Detailed Description

Main methods that implement the typical running patterns for executables.

Author

Ian W. Davis