FragmentPicker.hh File Reference

Fragment picker - the core part of picking machinery. More...

#include <protocols/frag_picker/FragmentPicker.fwd.hh>
#include <protocols/frag_picker/ContactCounts.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.fwd.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/CandidatesCollector.hh>
#include <protocols/frag_picker/FragmentSelectingRule.hh>
#include <protocols/frag_picker/scores/FragmentScoreManager.hh>
#include <protocols/frag_picker/scores/AtomPairConstraintsScore.hh>
#include <protocols/frag_picker/scores/PValuedFragmentScoreManager.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.fwd.hh>
#include <protocols/frag_picker/SidechainContactDistCutoff.hh>
#include <protocols/frag_picker/nonlocal/NonlocalPair.hh>
#include <protocols/frag_picker/ContactTypes.hh>
#include <protocols/frag_picker/quota/QuotaCollector.fwd.hh>
#include <core/types.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/fragment/ConstantLengthFragSet.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/vector1.hh>
#include <string>
#include <map>
#include <sstream>
#include <set>

Classes
class	protocols::frag_picker::QuotaDebug
class	protocols::frag_picker::FragmentPicker
	The core of the fragment picking machinery. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker

Typedefs
typedef std::pair< Size, Size >	protocols::frag_picker::PosPair
typedef std::pair < FragmentCandidateOP, scores::FragmentScoreMapOP >	protocols::frag_picker::Candidate
typedef utility::vector1 < Candidate >	protocols::frag_picker::Candidates
typedef std::map< Size, CandidatesCollectorOP >	protocols::frag_picker::CandidatesSink

Detailed Description

Fragment picker - the core part of picking machinery.

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)