MDBase.cc File Reference

initialization for MD More...

#include <protocols/md/MDBase.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <fstream>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::md

Functions
static thread_local basic::Tracer	protocols::md::TR ("protocols.md")

Detailed Description

initialization for MD

Author

Hahnbeom Park