MotifSearch.cc File Reference

Motif searching protocol. More...

#include <protocols/motifs/MotifSearch.hh>
#include <protocols/motifs/BuildPosition.hh>
#include <protocols/motifs/Motif.hh>
#include <protocols/motifs/MotifHit.hh>
#include <protocols/motifs/MotifLibrary.hh>
#include <protocols/motifs/motif_utils.hh>
#include <protocols/dna/DnaDesignDef.hh>
#include <protocols/dna/DnaInterfaceFinder.hh>
#include <protocols/dna/util.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSetFactory.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <basic/Tracer.hh>
#include <utility/io/ozstream.hh>
#include <numeric/xyzVector.hh>
#include <iostream>
#include <basic/options/option.hh>
#include <basic/options/keys/motifs.OptionKeys.gen.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::motifs

Functions
static thread_local basic::Tracer	protocols::motifs::ms_tr ("protocols.motifs.MotifSearch", basic::t_info)

Detailed Description

Motif searching protocol.

Author

sthyme (sthym.nosp@m.e@gm.nosp@m.ail.c.nosp@m.om)