pose_mod.cc File Reference

methods for Pose modifications More...

#include <protocols/forge/methods/pose_mod.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/FoldTree.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/OptCysHG.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/Tracer.hh>
#include <cmath>
#include <list>
#include <map>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::forge
	protocols::forge::methods

Functions
static thread_local basic::Tracer	protocols::forge::methods::TR ("protocols.forge.methods.pose_mod")
bool	protocols::forge::methods::add_cutpoint_variants (core::pose::Pose &pose, core::Size const pos)
	add cutpoint variants at a specific position More...
bool	protocols::forge::methods::remove_cutpoint_variants (core::pose::Pose &pose, core::Size const pos)
	remove cutpoint variants at a specific position More...
void	protocols::forge::methods::restore_residues (std::map< core::Size, core::Size > const &old2new, core::pose::Pose &archive_pose, core::pose::Pose &pose)
	restore residues (i.e. sidechains) More...
void	protocols::forge::methods::restore_residues (core::pose::Pose &archive_pose, core::pose::Pose &pose)
	restore residues (i.e. sidechains) More...

Detailed Description

methods for Pose modifications

Author

Yih-En Andrew Ban (yab@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)