idealize.cc File Reference

#include <protocols/idealize/idealize.hh>
#include <core/types.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/rms_util.hh>
#include <core/pose/PDBInfo.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/random/random.hh>
#include <ObjexxFCL/format.hh>
#include <core/chemical/VariantType.hh>
#include <utility/vector1.hh>
#include <core/kinematics/FoldTree.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::idealize

Functions
static thread_local basic::Tracer	protocols::idealize::TR ("protocols.idealize")
void	protocols::idealize::dihedral_distance (pose::Pose const &pose1, pose::Pose const &pose2, utility::vector1< bool > const &use_pos, Real &avg_bb_angle_dev, Real &max_bb_angle_dev, Real &avg_chi_angle_dev, Real &max_chi_angle_dev)
	helper More...
void	protocols::idealize::basic_idealize (pose::Pose &pose, utility::vector1< Size > pos_list, scoring::ScoreFunction const &scorefxn, bool const fast, bool const chainbreaks)

Detailed Description

Author