KCluster.hh File Reference

Fast clustering algorithm for large silent file. More...

#include <protocols/toolbox/KCluster.fwd.hh>
#include <protocols/toolbox/DecoySetEvaluation.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/FArray3D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray3.hh>
#include <ObjexxFCL/FArray2.hh>
#include <ObjexxFCL/FArray1.hh>
#include <ObjexxFCL/FArray2P.hh>
#include <ObjexxFCL/FArray3P.hh>
#include <string>

Classes
class	protocols::toolbox::KClusterElement
class	protocols::toolbox::KClusterData
	database of a K-style Clustering algorithm More...
class	protocols::toolbox::KCluster
	basic class for performing a K-style Clustering algorithm More...
class	protocols::toolbox::KMedoid
	Typical K-Medoids Clustering Algorithm. More...
class	protocols::toolbox::GreedyKCenter
	Greedy K-Center Clustering Algorithm. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::toolbox

Functions
KClusterOP	protocols::toolbox::get_K_cluster_engine (const string &style)
string	protocols::toolbox::file_full_path (string tag)
string	protocols::toolbox::fix_tag_suffix (string str)

Detailed Description

Fast clustering algorithm for large silent file.

Author

Yuan Liu (wenda.nosp@m.o@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)