rename_params.py File Reference

Namespaces
	rename_params

Variables
list	rename_params.char_set
string	rename_params.usage = "%prog -d path/to/database params_directory"
tuple	rename_params.parser = OptionParser(usage)
list	rename_params.param_dir = args[0]
tuple	rename_params.ligand_names = itertools.product(char_set,repeat=3)
tuple	rename_params.disallowed_ligands = get_disallowed_ligands(options.database)
tuple	rename_params.exclude_list = open(options.excluded,'r')
tuple	rename_params.line = line.rstrip()
string	rename_params.pdb_path_template = "%(subdir)s/%(param)s.pdb"
string	rename_params.conformer_path_template = "%(subdir)s/%(param)s_conformers.pdb"
tuple	rename_params.ligand_name = ligand_names.next()
tuple	rename_params.params_path = glob.glob(subdir+"/*.params")
tuple	rename_params.param_name = params_path.split("/")
dictionary	rename_params.pdb_path = pdb_path_template%{"subdir" : subdir, "param" : param_name}
dictionary	rename_params.conformer_path = conformer_path_template%{"subdir" : subdir, "param" : param_name}
dictionary	rename_params.new_pdb_path = pdb_path_template%{"subdir" : subdir, "param" : ligand_name}
dictionary	rename_params.new_conformer_path = conformer_path_template%{"subdir" : subdir, "param" : ligand_name}
string	rename_params.new_params_path = subdir+"/"