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public → basic Relation

File in src/apps/publicIncludes file in src/basic
AbinitioRelax.ccoptions / option.hh
AbinitioRelax.ccoptions / keys / run.OptionKeys.gen.hh
interface_design / anchored_design / AnchoredDesign.ccTracer.hh
interface_design / anchored_design / AnchoredPDBCreator.ccoptions / option.hh
interface_design / anchored_design / AnchoredPDBCreator.ccTracer.hh
interface_design / anchored_design / AnchorFinder.ccoptions / option.hh
interface_design / anchored_design / AnchorFinder.ccoptions / keys / pose_metrics.OptionKeys.gen.hh
interface_design / anchored_design / AnchorFinder.ccTracer.hh
antibody / antibody_CR_paratope.ccoptions / keys / in.OptionKeys.gen.hh
antibody / antibody_CR_paratope.ccMetricValue.hh
antibody / antibody_CR_paratope.ccTracer.hh
antibody / antibody_graft.ccoptions / option.hh
antibody / antibody_graft.ccTracer.hh
antibody / antibody_H3.ccoptions / option.hh
antibody / antibody_H3.ccTracer.hh
antibody / antibody_legacy.ccTracer.hh
backrub.ccoptions / keys / backrub.OptionKeys.gen.hh
backrub.ccoptions / keys / constraints.OptionKeys.gen.hh
backrub.ccoptions / keys / in.OptionKeys.gen.hh
backrub.ccoptions / option.hh
backrub.ccoptions / option_macros.hh
backrub.ccoptions / keys / out.OptionKeys.gen.hh
backrub.ccoptions / keys / packing.OptionKeys.gen.hh
backrub.ccTracer.hh
analysis / batch_distances.ccoptions / keys / james.OptionKeys.gen.hh
analysis / batch_distances.ccoptions / option.hh
analysis / batch_distances.ccTracer.fwd.hh
design / beta_peptide_modeling.ccoptions / keys / in.OptionKeys.gen.hh
design / beta_peptide_modeling.ccoptions / option.hh
design / beta_peptide_modeling.ccoptions / option_macros.hh
design / beta_peptide_modeling.ccoptions / keys / out.OptionKeys.gen.hh
flexpep_docking / BuildPeptide.ccoptions / keys / in.OptionKeys.gen.hh
flexpep_docking / BuildPeptide.ccoptions / option.hh
flexpep_docking / BuildPeptide.ccoptions / option_macros.hh
flexpep_docking / BuildPeptide.ccoptions / keys / OptionKeys.hh
flexpep_docking / BuildPeptide.ccoptions / keys / out.OptionKeys.gen.hh
flexpep_docking / BuildPeptide.ccTracer.hh
scenarios / ca_to_allatom.ccoptions / after_opts.hh
scenarios / ca_to_allatom.ccoptions / keys / edensity.OptionKeys.gen.hh
scenarios / ca_to_allatom.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / ca_to_allatom.ccoptions / keys / loops.OptionKeys.gen.hh
scenarios / ca_to_allatom.ccoptions / option.hh
scenarios / ca_to_allatom.ccoptions / option_macros.hh
scenarios / ca_to_allatom.ccoptions / keys / out.OptionKeys.gen.hh
scenarios / ca_to_allatom.ccoptions / keys / RBSegmentRelax.OptionKeys.gen.hh
scenarios / ca_to_allatom.ccTracer.hh
cluster.ccoptions / keys / cluster.OptionKeys.gen.hh
cluster.ccoptions / keys / in.OptionKeys.gen.hh
cluster.ccoptions / option.hh
cluster.ccoptions / keys / out.OptionKeys.gen.hh
cluster.ccoptions / keys / symmetry.OptionKeys.gen.hh
combine_silent.ccoptions / keys / in.OptionKeys.gen.hh
combine_silent.ccoptions / option.hh
combine_silent.ccoptions / option_macros.hh
combine_silent.ccoptions / keys / out.OptionKeys.gen.hh
analysis / contactMap.ccoptions / keys / contactMap.OptionKeys.gen.hh
analysis / contactMap.ccdatacache / DataMap.hh
analysis / contactMap.ccoptions / keys / in.OptionKeys.gen.hh
analysis / contactMap.ccoptions / option.hh
analysis / contactMap.ccoptions / option_macros.hh
analysis / contactMap.ccTracer.hh
coupled_moves / coupled_moves.ccoptions / keys / backrub.OptionKeys.gen.hh
coupled_moves / coupled_moves.ccbasic.hh
coupled_moves / coupled_moves.ccoptions / keys / constraints.OptionKeys.gen.hh
coupled_moves / coupled_moves.ccoptions / keys / in.OptionKeys.gen.hh
coupled_moves / coupled_moves.ccoptions / option_macros.hh
coupled_moves / coupled_moves.ccoptions / keys / out.OptionKeys.gen.hh
coupled_moves / coupled_moves.ccoptions / keys / packing.OptionKeys.gen.hh
coupled_moves / coupled_moves.ccTracer.hh
farna / cs_rosetta_rna.ccoptions / keys / in.OptionKeys.gen.hh
farna / cs_rosetta_rna.ccdatabase / open.hh
farna / cs_rosetta_rna.ccoptions / option.hh
farna / cs_rosetta_rna.ccoptions / option_macros.hh
farna / cs_rosetta_rna.ccoptions / keys / out.OptionKeys.gen.hh
farna / cs_rosetta_rna.ccoptions / keys / rna.OptionKeys.gen.hh
farna / cs_rosetta_rna.ccoptions / keys / score.OptionKeys.gen.hh
enzdes / CstfileToTheozymePDB.ccoptions / keys / in.OptionKeys.gen.hh
enzdes / CstfileToTheozymePDB.ccoptions / keys / match.OptionKeys.gen.hh
enzdes / CstfileToTheozymePDB.ccoptions / option.hh
enzdes / CstfileToTheozymePDB.ccTracer.hh
enzdes / CstfileToTheozymePDB.ccoptions / util.hh
darc / DARC.ccoptions / keys / fingerprint.OptionKeys.gen.hh
darc / DARC.ccMetricValue.hh
darc / DARC.ccoptions / option_macros.hh
darc / DARC.ccoptions / keys / out.OptionKeys.gen.hh
ddg / ddg_monomer.ccoptions / after_opts.hh
ddg / ddg_monomer.ccoptions / keys / ddg.OptionKeys.gen.hh
ddg / ddg_monomer.ccoptions / keys / in.OptionKeys.gen.hh
ddg / ddg_monomer.ccdatabase / open.hh
ddg / ddg_monomer.ccoptions / option_macros.hh
ddg / ddg_monomer.ccoptions / keys / OptionKeys.hh
ddg / ddg_monomer.ccoptions / keys / packing.OptionKeys.gen.hh
ddg / ddg_monomer.ccoptions / keys / score.OptionKeys.gen.hh
ddg / ddg_monomer.ccTracer.hh
ddg / ddg_monomer.ccoptions / util.hh
electron_density / denovo_density.ccoptions / keys / edensity.OptionKeys.gen.hh
electron_density / denovo_density.ccoptions / keys / in.OptionKeys.gen.hh
electron_density / denovo_density.ccoptions / option.hh
electron_density / denovo_density.ccoptions / option_macros.hh
electron_density / denovo_density.ccoptions / keys / OptionKeys.hh
electron_density / denovo_density.ccoptions / keys / out.OptionKeys.gen.hh
electron_density / denovo_density.ccTracer.hh
electron_density / density_tools.ccoptions / keys / edensity.OptionKeys.gen.hh
electron_density / density_tools.ccoptions / keys / in.OptionKeys.gen.hh
electron_density / density_tools.ccoptions / option.hh
electron_density / density_tools.ccoptions / option_macros.hh
electron_density / density_tools.ccoptions / keys / OptionKeys.hh
electron_density / density_tools.ccoptions / util.hh
docking / docking_prepack_protocol.ccoptions / keys / docking.OptionKeys.gen.hh
docking / docking_prepack_protocol.ccoptions / option.hh
docking / docking_protocol.ccoptions / keys / docking.OptionKeys.gen.hh
docking / docking_protocol.ccoptions / option.hh
scenarios / doug_dock_design_min_mod2_cal_cal.ccMetricValue.hh
scenarios / doug_dock_design_min_mod2_cal_cal.ccoptions / option.hh
scenarios / doug_dock_design_min_mod2_cal_cal.ccoptions / keys / OptionKeys.hh
scenarios / doug_dock_design_min_mod2_cal_cal.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / doug_dock_design_min_mod2_cal_cal.ccTracer.hh
analysis / ensemble_analysis.ccoptions / keys / in.OptionKeys.gen.hh
analysis / ensemble_analysis.ccoptions / option_macros.hh
analysis / ensemble_analysis.ccoptions / keys / out.OptionKeys.gen.hh
analysis / ensemble_analysis.ccTracer.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / after_opts.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccbasic.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / keys / ddg.OptionKeys.gen.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / keys / in.OptionKeys.gen.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccdatabase / open.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / option.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / keys / OptionKeys.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / keys / out.OptionKeys.gen.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / keys / score.OptionKeys.gen.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccTracer.hh
ddg / ensemble_generator_score12_sidechain_ver2.ccoptions / util.hh
enzdes / enzyme_design.ccdatacache / BasicDataCache.hh
enzdes / enzyme_design.ccdatacache / CacheableString.hh
enzdes / enzyme_design.ccoptions / keys / enzdes.OptionKeys.gen.hh
enzdes / enzyme_design.ccoptions / option.hh
enzdes / enzyme_design.ccoptions / keys / out.OptionKeys.gen.hh
enzdes / enzyme_design.ccoptions / keys / run.OptionKeys.gen.hh
enzdes / enzyme_design.ccTracer.hh
rna_util / erraser_minimizer.ccoptions / keys / edensity.OptionKeys.gen.hh
rna_util / erraser_minimizer.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / erraser_minimizer.ccoptions / option.hh
rna_util / erraser_minimizer.ccoptions / option_macros.hh
rna_util / erraser_minimizer.ccoptions / keys / OptionKeys.hh
rna_util / erraser_minimizer.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / erraser_minimizer.ccoptions / keys / rna.OptionKeys.gen.hh
rna_util / erraser_minimizer.ccoptions / keys / score.OptionKeys.gen.hh
rna_util / erraser_minimizer.ccoptions / util.hh
scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccMetricValue.hh
scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccoptions / option.hh
scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccTracer.hh
ligand_docking / extract_atomtree_diffs.ccoptions / keys / enzdes.OptionKeys.gen.hh
ligand_docking / extract_atomtree_diffs.ccoptions / keys / in.OptionKeys.gen.hh
ligand_docking / extract_atomtree_diffs.ccoptions / option.hh
ligand_docking / extract_atomtree_diffs.ccoptions / keys / out.OptionKeys.gen.hh
ligand_docking / extract_atomtree_diffs.ccoptions / keys / run.OptionKeys.gen.hh
ligand_docking / extract_atomtree_diffs.ccTracer.hh
motif_tools / extract_motifs.ccbasic.hh
motif_tools / extract_motifs.ccoptions / keys / in.OptionKeys.gen.hh
motif_tools / extract_motifs.ccoptions / keys / motifs.OptionKeys.gen.hh
motif_tools / extract_motifs.ccoptions / option.hh
motif_tools / extract_motifs.ccoptions / keys / out.OptionKeys.gen.hh
motif_tools / extract_motifs.ccTracer.hh
motif_tools / extract_motifs.ccoptions / util.hh
extract_pdbs.ccoptions / keys / in.OptionKeys.gen.hh
extract_pdbs.ccoptions / option.hh
extract_pdbs.ccoptions / option_macros.hh
extract_pdbs.ccoptions / keys / out.OptionKeys.gen.hh
extract_pdbs.ccoptions / keys / score.OptionKeys.gen.hh
extract_pdbs.ccTracer.hh
analysis / fast_clustering.ccoptions / keys / cluster.OptionKeys.gen.hh
analysis / fast_clustering.ccoptions / keys / in.OptionKeys.gen.hh
analysis / fast_clustering.ccoptions / option_macros.hh
analysis / fast_clustering.ccTracer.hh
comparative_modeling / fast_gap.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / fast_gap.ccoptions / option.hh
comparative_modeling / fast_gap.ccoptions / keys / relax.OptionKeys.gen.hh
comparative_modeling / fast_gap.ccTracer.hh
fiber_diffraction / FiberDiffractionFreeSet.ccoptions / keys / in.OptionKeys.gen.hh
fiber_diffraction / FiberDiffractionFreeSet.ccoptions / option.hh
fiber_diffraction / FiberDiffractionFreeSet.ccoptions / keys / score.OptionKeys.gen.hh
fiber_diffraction / FiberDiffractionFreeSet.ccoptions / keys / symmetry.OptionKeys.gen.hh
fiber_diffraction / FiberDiffractionFreeSet.ccTracer.hh
comparative_modeling / fix_alignment_to_match_pdb.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / fix_alignment_to_match_pdb.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / fix_alignment_to_match_pdb.ccoptions / option.hh
comparative_modeling / fix_alignment_to_match_pdb.ccoptions / keys / out.OptionKeys.gen.hh
comparative_modeling / fix_alignment_to_match_pdb.ccTracer.hh
design / fixbb.ccoptions / option.hh
design / fixbb.ccoptions / keys / packing.OptionKeys.gen.hh
design / fixbb.ccoptions / keys / run.OptionKeys.gen.hh
design / fixbb.ccoptions / keys / symmetry.OptionKeys.gen.hh
flexpep_docking / FlexPepDocking.ccdatacache / BasicDataCache.hh
flexpep_docking / FlexPepDocking.ccdatacache / CacheableString.hh
flexpep_docking / FlexPepDocking.ccoptions / keys / in.OptionKeys.gen.hh
flexpep_docking / FlexPepDocking.ccoptions / option.hh
flexpep_docking / FlexPepDocking.ccoptions / keys / out.OptionKeys.gen.hh
flexpep_docking / FlexPepDocking.ccoptions / keys / run.OptionKeys.gen.hh
flexpep_docking / FlexPepDocking.ccTracer.hh
scenarios / FloppyTail.ccTracer.hh
fragment_picker.ccoptions / keys / constraints.OptionKeys.gen.hh
fragment_picker.ccoptions / keys / frags.OptionKeys.gen.hh
fragment_picker.ccoptions / keys / in.OptionKeys.gen.hh
fragment_picker.ccoptions / option.hh
fragment_picker.ccoptions / option_macros.hh
fragment_picker.ccoptions / keys / OptionKeys.hh
fragment_picker.ccoptions / keys / out.OptionKeys.gen.hh
fragment_picker.ccprof.hh
fragment_picker.ccTracer.hh
comparative_modeling / full_length_model.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / full_length_model.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / full_length_model.ccoptions / option.hh
comparative_modeling / full_length_model.ccoptions / keys / relax.OptionKeys.gen.hh
comparative_modeling / full_length_model.ccTracer.hh
match / gen_apo_grids.ccoptions / keys / in.OptionKeys.gen.hh
match / gen_apo_grids.ccoptions / option.hh
match / gen_apo_grids.ccoptions / keys / packstat.OptionKeys.gen.hh
match / gen_apo_grids.ccTracer.hh
match / gen_lig_grids.ccoptions / keys / in.OptionKeys.gen.hh
match / gen_lig_grids.ccoptions / option.hh
match / gen_lig_grids.ccoptions / option_macros.hh
match / gen_lig_grids.ccTracer.hh
scenarios / chemically_conjugated_docking / Gp_extra_bodies.hhoptions / keys / chemically_conjugated_docking.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / Gp_extra_bodies.hhoptions / option.hh
scenarios / chemically_conjugated_docking / Gp_extra_bodies.hhTracer.hh
scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhTracer.hh
noncanonical_backbones / hbs_design.ccMetricValue.hh
noncanonical_backbones / hbs_design.ccoptions / option.hh
noncanonical_backbones / hbs_design.ccoptions / keys / out.OptionKeys.gen.hh
noncanonical_backbones / hbs_design.ccoptions / keys / run.OptionKeys.gen.hh
noncanonical_backbones / hbs_design.ccTracer.hh
noncanonical_backbones / hbs_design.ccoptions / util.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccdatacache / CacheableData.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / keys / enzdes.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccMetricValue.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / option.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / keys / packing.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccoptions / keys / symmetry.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_design.ccTracer.hh
scenarios / beta_strand_homodimer_design / homodimer_maker.ccoptions / keys / jd2.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_maker.ccoptions / option.hh
scenarios / beta_strand_homodimer_design / homodimer_maker.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_maker.ccoptions / keys / score.OptionKeys.gen.hh
scenarios / beta_strand_homodimer_design / homodimer_maker.ccTracer.hh
idealize_jd2.ccoptions / option.hh
idealize_jd2.ccoptions / option_macros.hh
idealize_jd2.ccoptions / keys / symmetry.OptionKeys.gen.hh
motif_tools / incorporate_motifs.ccbasic.hh
motif_tools / incorporate_motifs.ccoptions / keys / in.OptionKeys.gen.hh
motif_tools / incorporate_motifs.ccoptions / keys / motifs.OptionKeys.gen.hh
motif_tools / incorporate_motifs.ccoptions / option.hh
motif_tools / incorporate_motifs.ccoptions / keys / out.OptionKeys.gen.hh
motif_tools / incorporate_motifs.ccTracer.hh
motif_tools / incorporate_motifs.ccoptions / util.hh
analysis / InterfaceAnalyzer.ccoptions / option.hh
analysis / InterfaceAnalyzer.ccTracer.hh
ligand_docking / ligand_dock.ccoptions / keys / docking.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccoptions / keys / enzdes.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccoptions / keys / in.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccoptions / keys / jd2.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccoptions / option.hh
ligand_docking / ligand_dock.ccoptions / keys / out.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccoptions / keys / packing.OptionKeys.gen.hh
ligand_docking / ligand_dock.ccTracer.hh
ligand_docking / ligand_rpkmin.ccoptions / keys / docking.OptionKeys.gen.hh
ligand_docking / ligand_rpkmin.ccoptions / keys / in.OptionKeys.gen.hh
ligand_docking / ligand_rpkmin.ccoptions / option_macros.hh
ligand_docking / ligand_rpkmin.ccoptions / keys / out.OptionKeys.gen.hh
ligand_docking / ligand_rpkmin.ccoptions / keys / packing.OptionKeys.gen.hh
loop_modeling / loopmodel.ccoptions / keys / loops.OptionKeys.gen.hh
loop_modeling / loopmodel.ccoptions / option.hh
loop_modeling / loopmodel.ccTracer.hh
pocket / make_exemplar.ccoptions / after_opts.hh
pocket / make_exemplar.ccoptions / keys / docking.OptionKeys.gen.hh
pocket / make_exemplar.ccoptions / keys / in.OptionKeys.gen.hh
pocket / make_exemplar.ccoptions / option.hh
pocket / make_exemplar.ccoptions / option_macros.hh
pocket / make_exemplar.ccoptions / keys / out.OptionKeys.gen.hh
pocket / make_exemplar.ccoptions / keys / pocket_grid.OptionKeys.gen.hh
pocket / make_exemplar.ccoptions / keys / relax.OptionKeys.gen.hh
pocket / make_exemplar.ccTracer.hh
pocket / make_exemplar.ccoptions / util.hh
darc / make_ray_files.ccoptions / after_opts.hh
darc / make_ray_files.ccoptions / keys / fingerprint.OptionKeys.gen.hh
darc / make_ray_files.ccoptions / option.hh
darc / make_ray_files.ccoptions / option_macros.hh
darc / make_ray_files.ccoptions / keys / OptionKeys.hh
darc / make_ray_files.ccoptions / keys / out.OptionKeys.gen.hh
darc / make_ray_files.ccoptions / keys / pocket_grid.OptionKeys.gen.hh
darc / make_ray_files.ccTracer.hh
darc / make_ray_files.ccoptions / util.hh
ncaa_utilities / make_rot_lib.ccoptions / option.hh
ncaa_utilities / MakeRotLib.ccTracer.hh
match / match.ccoptions / keys / match.OptionKeys.gen.hh
match / match.ccoptions / option.hh
match / match.ccoptions / keys / run.OptionKeys.gen.hh
match / match.ccTracer.hh
match / match.ccoptions / util.hh
membrane_abinitio / membrane_abinitio2.ccoptions / keys / membrane.OptionKeys.gen.hh
membrane_abinitio / membrane_abinitio2.ccoptions / option.hh
magnesium / mg_modeler.ccoptions / keys / in.OptionKeys.gen.hh
magnesium / mg_modeler.ccoptions / keys / magnesium.OptionKeys.gen.hh
magnesium / mg_modeler.ccoptions / option.hh
magnesium / mg_modeler.ccoptions / option_macros.hh
magnesium / mg_modeler.ccoptions / keys / out.OptionKeys.gen.hh
magnesium / mg_modeler.ccoptions / keys / score.OptionKeys.gen.hh
magnesium / mg_modeler.ccTracer.hh
minimize.ccoptions / keys / in.OptionKeys.gen.hh
minimize.ccoptions / option.hh
minimize.ccoptions / keys / run.OptionKeys.gen.hh
minimize.ccTracer.hh
minimize_ppi.ccoptions / after_opts.hh
minimize_ppi.ccoptions / keys / docking.OptionKeys.gen.hh
minimize_ppi.ccoptions / keys / in.OptionKeys.gen.hh
minimize_ppi.ccMetricValue.hh
minimize_ppi.ccoptions / option.hh
minimize_ppi.ccoptions / option_macros.hh
minimize_ppi.ccoptions / keys / out.OptionKeys.gen.hh
minimize_ppi.ccoptions / keys / relax.OptionKeys.gen.hh
minimize_ppi.ccoptions / util.hh
ddg / minimize_with_cst.ccoptions / keys / constraints.OptionKeys.gen.hh
ddg / minimize_with_cst.ccoptions / keys / ddg.OptionKeys.gen.hh
ddg / minimize_with_cst.ccoptions / keys / in.OptionKeys.gen.hh
ddg / minimize_with_cst.ccoptions / option.hh
ddg / minimize_with_cst.ccoptions / keys / OptionKeys.hh
ddg / minimize_with_cst.ccoptions / keys / out.OptionKeys.gen.hh
ddg / minimize_with_cst.ccoptions / keys / score.OptionKeys.gen.hh
ddg / minimize_with_cst.ccoptions / util.hh
boinc / minirosetta.ccoptions / keys / boinc.OptionKeys.gen.hh
boinc / minirosetta.ccoptions / keys / in.OptionKeys.gen.hh
boinc / minirosetta.ccoptions / keys / jd2.OptionKeys.gen.hh
boinc / minirosetta.ccoptions / option.hh
boinc / minirosetta.ccoptions / keys / run.OptionKeys.gen.hh
membrane / mp_dock.ccTracer.hh
membrane / mp_dock_setup.ccTracer.hh
membrane / mp_mutate_relax.ccTracer.hh
membrane / mp_range_relax.ccTracer.hh
membrane / mp_span_from_pdb.ccoptions / keys / in.OptionKeys.gen.hh
membrane / mp_span_from_pdb.ccoptions / keys / mp.OptionKeys.gen.hh
membrane / mp_span_from_pdb.ccoptions / option.hh
membrane / mp_span_from_pdb.ccoptions / keys / out.OptionKeys.gen.hh
membrane / mp_span_from_pdb.ccTracer.hh
membrane / mp_symdock.ccTracer.hh
membrane / mp_transform.ccoptions / keys / in.OptionKeys.gen.hh
membrane / mp_transform.ccoptions / keys / mp.OptionKeys.gen.hh
membrane / mp_transform.ccoptions / option.hh
membrane / mp_transform.ccTracer.hh
membrane / mp_viewer.ccoptions / keys / mp.OptionKeys.gen.hh
membrane / mp_viewer.ccoptions / option.hh
design / mpi_msd.ccMetricValue.hh
design / mpi_msd.ccoptions / keys / ms.OptionKeys.gen.hh
design / mpi_msd.ccoptions / option.hh
design / mpi_msd.ccoptions / option_macros.hh
design / mpi_msd.ccTracer.hh
electron_density / mr_protocols.ccoptions / keys / edensity.OptionKeys.gen.hh
electron_density / mr_protocols.ccoptions / keys / in.OptionKeys.gen.hh
electron_density / mr_protocols.ccoptions / keys / loops.OptionKeys.gen.hh
electron_density / mr_protocols.ccoptions / option.hh
electron_density / mr_protocols.ccoptions / option_macros.hh
electron_density / mr_protocols.ccoptions / keys / OptionKeys.hh
electron_density / mr_protocols.ccoptions / keys / symmetry.OptionKeys.gen.hh
electron_density / mr_protocols.ccTracer.hh
rna_util / nucleobase_sample_around.ccoptions / keys / chemical.OptionKeys.gen.hh
rna_util / nucleobase_sample_around.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / nucleobase_sample_around.ccoptions / option.hh
rna_util / nucleobase_sample_around.ccoptions / option_macros.hh
rna_util / nucleobase_sample_around.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / nucleobase_sample_around.ccoptions / keys / sample_around.OptionKeys.gen.hh
rna_util / nucleobase_sample_around.ccoptions / keys / score.OptionKeys.gen.hh
noncanonical_backbones / oop_design.ccoptions / keys / in.OptionKeys.gen.hh
noncanonical_backbones / oop_design.ccMetricValue.hh
noncanonical_backbones / oop_design.ccoptions / option.hh
noncanonical_backbones / oop_design.ccoptions / keys / out.OptionKeys.gen.hh
noncanonical_backbones / oop_design.ccoptions / keys / run.OptionKeys.gen.hh
noncanonical_backbones / oop_design.ccTracer.hh
noncanonical_backbones / oop_design.ccoptions / util.hh
packstat.ccoptions / keys / in.OptionKeys.gen.hh
packstat.ccoptions / option.hh
packstat.ccoptions / keys / out.OptionKeys.gen.hh
packstat.ccoptions / keys / packstat.OptionKeys.gen.hh
packstat.ccTracer.hh
comparative_modeling / partial_thread.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / partial_thread.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / partial_thread.ccoptions / option.hh
comparative_modeling / partial_thread.ccTracer.hh
pepspec / pepspec.ccbasic.hh
pepspec / pepspec.ccoptions / keys / constraints.OptionKeys.gen.hh
pepspec / pepspec.ccoptions / keys / in.OptionKeys.gen.hh
pepspec / pepspec.ccMetricValue.hh
pepspec / pepspec.ccdatabase / open.hh
pepspec / pepspec.ccoptions / keys / out.OptionKeys.gen.hh
pepspec / pepspec.ccoptions / keys / pepspec.OptionKeys.gen.hh
pepspec / pepspec.ccoptions / keys / score.OptionKeys.gen.hh
pepspec / pepspec.ccTracer.hh
pepspec / pepspec.ccoptions / util.hh
pepspec / pepspec_anchor_dock.ccbasic.hh
pepspec / pepspec_anchor_dock.ccoptions / keys / in.OptionKeys.gen.hh
pepspec / pepspec_anchor_dock.ccdatabase / open.hh
pepspec / pepspec_anchor_dock.ccoptions / option.hh
pepspec / pepspec_anchor_dock.ccoptions / keys / out.OptionKeys.gen.hh
pepspec / pepspec_anchor_dock.ccoptions / keys / pepspec.OptionKeys.gen.hh
pepspec / pepspec_anchor_dock.ccoptions / keys / score.OptionKeys.gen.hh
pepspec / pepspec_anchor_dock.ccTracer.hh
pepspec / pepspec_anchor_dock.ccoptions / util.hh
analysis / PeptideDeriver.ccoptions / keys / in.OptionKeys.gen.hh
analysis / PeptideDeriver.ccoptions / option.hh
analysis / PeptideDeriver.ccoptions / keys / out.OptionKeys.gen.hh
analysis / PeptideDeriver.ccoptions / keys / peptide_deriver.OptionKeys.gen.hh
analysis / PeptideDeriver.ccTracer.hh
noncanonical_backbones / peptoid_design.ccMetricValue.hh
noncanonical_backbones / peptoid_design.ccoptions / option.hh
noncanonical_backbones / peptoid_design.ccoptions / keys / out.OptionKeys.gen.hh
noncanonical_backbones / peptoid_design.ccoptions / keys / run.OptionKeys.gen.hh
noncanonical_backbones / peptoid_design.ccTracer.hh
noncanonical_backbones / peptoid_design.ccoptions / util.hh
analysis / per_residue_energies.ccoptions / keys / in.OptionKeys.gen.hh
analysis / per_residue_energies.ccoptions / keys / james.OptionKeys.gen.hh
analysis / per_residue_energies.ccoptions / option.hh
analysis / per_residue_energies.ccoptions / keys / out.OptionKeys.gen.hh
design / pmut_scan_parallel.ccoptions / option.hh
design / pmut_scan_parallel.ccTracer.hh
design / pmut_scan_parallel.ccoptions / util.hh
pocket / pocket_measure.ccoptions / after_opts.hh
pocket / pocket_measure.ccoptions / option_macros.hh
pocket / pocket_measure.ccoptions / keys / out.OptionKeys.gen.hh
pocket / pocket_measure.ccoptions / keys / pocket_grid.OptionKeys.gen.hh
pocket / pocket_measure.ccoptions / util.hh
pocket / pocket_relax.ccoptions / keys / constraints.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / keys / edensity.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / keys / in.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / option.hh
pocket / pocket_relax.ccoptions / option_macros.hh
pocket / pocket_relax.ccoptions / keys / pocket_grid.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / keys / relax.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / keys / run.OptionKeys.gen.hh
pocket / pocket_relax.ccoptions / keys / symmetry.OptionKeys.gen.hh
pocket / pocket_relax.ccTracer.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / after_opts.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / keys / constraints.OptionKeys.gen.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / option.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / option_macros.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / keys / out.OptionKeys.gen.hh
pocket / pocket_suggest_target_residues_by_ddg.ccTracer.hh
pocket / pocket_suggest_target_residues_by_ddg.ccoptions / util.hh
nmr / r_noe_assign.ccoptions / keys / in.OptionKeys.gen.hh
nmr / r_noe_assign.ccoptions / option_macros.hh
nmr / r_noe_assign.ccprof.hh
nmr / r_noe_assign.ccTracer.hh
rna_util / recces_turner.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / recces_turner.ccoptions / option.hh
rna_util / recces_turner.ccoptions / option_macros.hh
rna_util / recces_turner.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / recces_turner.ccoptions / keys / score.OptionKeys.gen.hh
relax.ccoptions / keys / in.OptionKeys.gen.hh
relax.ccoptions / option.hh
relax.ccoptions / keys / relax.OptionKeys.gen.hh
relax.ccTracer.hh
remodel.ccoptions / keys / in.OptionKeys.gen.hh
remodel.ccoptions / option.hh
remodel.ccoptions / keys / out.OptionKeys.gen.hh
remodel.ccoptions / keys / packing.OptionKeys.gen.hh
remodel.ccoptions / keys / pose_metrics.OptionKeys.gen.hh
remodel.ccoptions / keys / remodel.OptionKeys.gen.hh
remodel.ccoptions / keys / run.OptionKeys.gen.hh
remodel.ccTracer.hh
remodel.ccoptions / keys / ufv.OptionKeys.gen.hh
analysis / residue_energy_breakdown.ccoptions / keys / in.OptionKeys.gen.hh
analysis / residue_energy_breakdown.ccoptions / option.hh
analysis / residue_energy_breakdown.ccoptions / keys / out.OptionKeys.gen.hh
rosetta_scripts / revert_design_to_native.ccoptions / option.hh
rosetta_scripts / revert_design_to_native.ccoptions / keys / OptionKeys.hh
rosetta_scripts / revert_design_to_native.ccTracer.hh
farna / rna_cluster.ccoptions / keys / cluster.OptionKeys.gen.hh
farna / rna_cluster.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_cluster.ccoptions / option.hh
farna / rna_cluster.ccoptions / option_macros.hh
farna / rna_cluster.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_database.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_database.ccoptions / option.hh
farna / rna_database.ccoptions / option_macros.hh
farna / rna_database.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_database.ccoptions / keys / rna.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / chemical.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / constraints.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_denovo.ccdatabase / open.hh
farna / rna_denovo.ccoptions / option.hh
farna / rna_denovo.ccoptions / option_macros.hh
farna / rna_denovo.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / rna.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / score.OptionKeys.gen.hh
farna / rna_denovo.ccoptions / keys / stepwise.OptionKeys.gen.hh
design / rna_design.ccoptions / keys / in.OptionKeys.gen.hh
design / rna_design.ccoptions / option.hh
design / rna_design.ccoptions / option_macros.hh
design / rna_design.ccoptions / keys / out.OptionKeys.gen.hh
design / rna_design.ccoptions / keys / packing.OptionKeys.gen.hh
design / rna_design.ccoptions / keys / score.OptionKeys.gen.hh
farna / rna_extract.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_extract.ccoptions / option.hh
farna / rna_extract.ccoptions / option_macros.hh
farna / rna_extract.ccoptions / keys / OptionKeys.hh
farna / rna_extract.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_features.ccoptions / keys / chemical.OptionKeys.gen.hh
rna_util / rna_features.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_features.ccdatabase / open.hh
rna_util / rna_features.ccoptions / option.hh
rna_util / rna_features.ccoptions / option_macros.hh
rna_util / rna_features.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_graft.ccoptions / keys / chemical.OptionKeys.gen.hh
rna_util / rna_graft.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_graft.ccoptions / option_macros.hh
rna_util / rna_graft.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_helix.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_helix.ccoptions / option.hh
rna_util / rna_helix.ccoptions / option_macros.hh
rna_util / rna_helix.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_helix.ccoptions / keys / rna.OptionKeys.gen.hh
rna_util / rna_helix.ccoptions / keys / score.OptionKeys.gen.hh
farna / rna_minimize.ccoptions / keys / constraints.OptionKeys.gen.hh
farna / rna_minimize.ccoptions / keys / full_model.OptionKeys.gen.hh
farna / rna_minimize.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_minimize.ccdatabase / open.hh
farna / rna_minimize.ccoptions / option.hh
farna / rna_minimize.ccoptions / option_macros.hh
farna / rna_minimize.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_minimize.ccoptions / keys / rna.OptionKeys.gen.hh
farna / rna_minimize.ccoptions / keys / score.OptionKeys.gen.hh
rna_util / rna_predict_chem_map.ccoptions / keys / chemical.OptionKeys.gen.hh
rna_util / rna_predict_chem_map.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_predict_chem_map.ccdatabase / open.hh
rna_util / rna_predict_chem_map.ccoptions / option.hh
rna_util / rna_predict_chem_map.ccoptions / option_macros.hh
rna_util / rna_predict_chem_map.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_score.ccdatacache / BasicDataCache.hh
farna / rna_score.ccoptions / keys / chemical.OptionKeys.gen.hh
farna / rna_score.ccoptions / keys / full_model.OptionKeys.gen.hh
farna / rna_score.ccoptions / keys / in.OptionKeys.gen.hh
farna / rna_score.ccdatabase / open.hh
farna / rna_score.ccoptions / option.hh
farna / rna_score.ccoptions / option_macros.hh
farna / rna_score.ccoptions / keys / out.OptionKeys.gen.hh
farna / rna_score.ccoptions / keys / rna.OptionKeys.gen.hh
farna / rna_score.ccoptions / keys / score.OptionKeys.gen.hh
farna / rna_score.ccoptions / keys / stepwise.OptionKeys.gen.hh
rna_util / rna_suitename.ccoptions / keys / full_model.OptionKeys.gen.hh
rna_util / rna_suitename.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_suitename.ccoptions / option.hh
rna_util / rna_suitename.ccoptions / option_macros.hh
rna_util / rna_suitename.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_suitename.ccoptions / keys / score.OptionKeys.gen.hh
rna_util / rna_thread.ccoptions / keys / in.OptionKeys.gen.hh
rna_util / rna_thread.ccoptions / option_macros.hh
rna_util / rna_thread.ccoptions / keys / out.OptionKeys.gen.hh
rna_util / rna_thread.ccoptions / keys / score.OptionKeys.gen.hh
rosetta_scripts / rosetta_scripts.ccoptions / keys / jd2.OptionKeys.gen.hh
rosetta_scripts / rosetta_scripts.ccoptions / option.hh
rosetta_scripts / rosetta_scripts.ccoptions / keys / parser.OptionKeys.gen.hh
rosetta_scripts / rosetta_scripts.ccTracer.hh
rosettaDNA / rosettaDNA.ccTracer.hh
analysis / score.ccoptions / keys / broker.OptionKeys.gen.hh
analysis / score.ccoptions / keys / constraints.OptionKeys.gen.hh
analysis / score.ccoptions / keys / edensity.OptionKeys.gen.hh
analysis / score.ccoptions / keys / in.OptionKeys.gen.hh
analysis / score.ccoptions / keys / krassk.OptionKeys.gen.hh
analysis / score.ccoptions / option.hh
analysis / score.ccoptions / keys / out.OptionKeys.gen.hh
analysis / score.ccoptions / keys / relax.OptionKeys.gen.hh
analysis / score.ccoptions / keys / rescore.OptionKeys.gen.hh
analysis / score.ccoptions / keys / symmetry.OptionKeys.gen.hh
analysis / score.ccTracer.hh
comparative_modeling / score_aln.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / score_aln.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / score_aln.ccoptions / option.hh
comparative_modeling / score_aln.ccoptions / keys / out.OptionKeys.gen.hh
comparative_modeling / score_aln.ccTracer.hh
comparative_modeling / score_aln2.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / score_aln2.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / score_aln2.ccoptions / option.hh
comparative_modeling / score_aln2.ccoptions / keys / out.OptionKeys.gen.hh
comparative_modeling / score_aln2.ccoptions / keys / run.OptionKeys.gen.hh
comparative_modeling / score_aln2.ccTracer.hh
analysis / score_jd2.ccoptions / keys / broker.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / chemical.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / constraints.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / edensity.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / in.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / mp.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / option.hh
analysis / score_jd2.ccoptions / option_macros.hh
analysis / score_jd2.ccoptions / keys / rescore.OptionKeys.gen.hh
analysis / score_jd2.ccoptions / keys / symmetry.OptionKeys.gen.hh
analysis / score_jd2.ccTracer.hh
ligand_docking / select_best_unique_ligand_poses.ccoptions / keys / docking.OptionKeys.gen.hh
ligand_docking / select_best_unique_ligand_poses.ccoptions / keys / in.OptionKeys.gen.hh
ligand_docking / select_best_unique_ligand_poses.ccoptions / option.hh
ligand_docking / select_best_unique_ligand_poses.ccoptions / keys / out.OptionKeys.gen.hh
ligand_docking / select_best_unique_ligand_poses.ccTracer.hh
design / sequence_recovery.ccdatacache / DataMap.hh
design / sequence_recovery.ccprof.hh
design / sequence_recovery.ccoptions / keys / run.OptionKeys.gen.hh
design / sequence_recovery.ccTracer.hh
design / sequence_recovery.ccoptions / util.hh
sequence_tolerance.ccoptions / keys / in.OptionKeys.gen.hh
sequence_tolerance.ccMetricValue.hh
sequence_tolerance.ccoptions / keys / ms.OptionKeys.gen.hh
sequence_tolerance.ccoptions / option.hh
sequence_tolerance.ccoptions / option_macros.hh
sequence_tolerance.ccoptions / keys / out.OptionKeys.gen.hh
sequence_tolerance.ccoptions / keys / packing.OptionKeys.gen.hh
sequence_tolerance.ccprof.hh
sequence_tolerance.ccTracer.hh
sewing / sewing_hasher.ccoptions / keys / in.OptionKeys.gen.hh
sewing / sewing_hasher.ccoptions / keys / inout.OptionKeys.gen.hh
sewing / sewing_hasher.ccoptions / option.hh
sewing / sewing_hasher.ccoptions / keys / sewing.OptionKeys.gen.hh
sewing / sewing_hasher.ccdatabase / sql_utils.hh
sewing / sewing_hasher.ccTracer.hh
cyclic_peptide / simple_cycpep_predict.ccoptions / keys / cyclic_peptide.OptionKeys.gen.hh
cyclic_peptide / simple_cycpep_predict.ccoptions / option.hh
cyclic_peptide / simple_cycpep_predict.ccoptions / keys / out.OptionKeys.gen.hh
cyclic_peptide / simple_cycpep_predict.ccTracer.hh
stepwise / stepwise.ccoptions / keys / chemical.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / constraints.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / full_model.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / in.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / option.hh
stepwise / stepwise.ccoptions / keys / out.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / rna.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / score.OptionKeys.gen.hh
stepwise / stepwise.ccoptions / keys / stepwise.OptionKeys.gen.hh
stepwise / stepwise.ccTracer.hh
struc_set_fragment_picker.ccoptions / keys / frags.OptionKeys.gen.hh
struc_set_fragment_picker.ccoptions / keys / in.OptionKeys.gen.hh
struc_set_fragment_picker.ccoptions / option.hh
struc_set_fragment_picker.ccoptions / option_macros.hh
struc_set_fragment_picker.ccoptions / keys / run.OptionKeys.gen.hh
struc_set_fragment_picker.ccTracer.hh
comparative_modeling / super_aln.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / super_aln.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / super_aln.ccoptions / option.hh
comparative_modeling / super_aln.ccoptions / keys / out.OptionKeys.gen.hh
design / supercharge.ccMetricValue.hh
design / supercharge.ccoptions / option.hh
design / supercharge.ccoptions / keys / out.OptionKeys.gen.hh
design / supercharge.ccoptions / keys / packing.OptionKeys.gen.hh
design / supercharge.ccTracer.hh
stepwise / legacy / swa_protein_main.ccoptions / after_opts.hh
stepwise / legacy / swa_protein_main.ccbasic.hh
stepwise / legacy / swa_protein_main.ccdatacache / BasicDataCache.hh
stepwise / legacy / swa_protein_main.ccdatacache / CacheableString.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / chemical.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / cluster.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / edensity.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / full_model.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / in.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccdatabase / open.hh
stepwise / legacy / swa_protein_main.ccoptions / option.hh
stepwise / legacy / swa_protein_main.ccoptions / option_macros.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / out.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / score.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccoptions / keys / stepwise.OptionKeys.gen.hh
stepwise / legacy / swa_protein_main.ccTracer.hh
stepwise / legacy / swa_protein_main.ccoptions / util.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / chemical.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / cluster.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / edensity.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / full_model.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / in.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / option.hh
stepwise / legacy / swa_rna_main.ccoptions / option_macros.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / OptionKeys.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / out.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / rna.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / score.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccoptions / keys / stepwise.OptionKeys.gen.hh
stepwise / legacy / swa_rna_main.ccTracer.hh
stepwise / legacy / swa_rna_util.ccoptions / keys / chemical.OptionKeys.gen.hh
stepwise / legacy / swa_rna_util.ccoptions / keys / in.OptionKeys.gen.hh
stepwise / legacy / swa_rna_util.ccoptions / option.hh
stepwise / legacy / swa_rna_util.ccoptions / option_macros.hh
stepwise / legacy / swa_rna_util.ccoptions / keys / OptionKeys.hh
stepwise / legacy / swa_rna_util.ccoptions / keys / out.OptionKeys.gen.hh
stepwise / legacy / swa_rna_util.ccoptions / keys / score.OptionKeys.gen.hh
stepwise / legacy / swa_rna_util.ccTracer.hh
SymDock.ccTracer.hh
comparative_modeling / template_features.ccoptions / keys / cm.OptionKeys.gen.hh
comparative_modeling / template_features.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / template_features.ccoptions / keys / james.OptionKeys.gen.hh
comparative_modeling / template_features.ccoptions / option.hh
comparative_modeling / template_features.ccTracer.hh
darc / theta_ligand.ccoptions / after_opts.hh
darc / theta_ligand.ccoptions / keys / docking.OptionKeys.gen.hh
darc / theta_ligand.ccoptions / keys / in.OptionKeys.gen.hh
darc / theta_ligand.ccMetricValue.hh
darc / theta_ligand.ccoptions / option.hh
darc / theta_ligand.ccoptions / option_macros.hh
darc / theta_ligand.ccoptions / keys / out.OptionKeys.gen.hh
darc / theta_ligand.ccoptions / keys / relax.OptionKeys.gen.hh
darc / theta_ligand.ccoptions / util.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / AnchoredDesign.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / chemically_conjugated_docking.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / loops.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccMetricValue.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / option.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / packing.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccprof.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccTracer.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / keys / AnchoredDesign.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / keys / loops.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccMetricValue.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / option.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / keys / packing.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccprof.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccTracer.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / keys / AnchoredDesign.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / keys / in.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / keys / loops.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccMetricValue.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / option.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / keys / packing.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccprof.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccoptions / keys / run.OptionKeys.gen.hh
scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccTracer.hh
ncaa_utilities / UnfoldedStateEnergyCalculator.ccoptions / option.hh
ncaa_utilities / UnfoldedStateEnergyCalculator.ccTracer.hh
internal / validate_database.ccoptions / keys / corrections.OptionKeys.gen.hh
internal / validate_database.ccoptions / keys / in.OptionKeys.gen.hh
internal / validate_database.ccdatabase / open.hh
internal / validate_database.ccoptions / option.hh
internal / validate_database.ccTracer.hh
comparative_modeling / validate_silent.ccoptions / keys / in.OptionKeys.gen.hh
comparative_modeling / validate_silent.ccoptions / option.hh
comparative_modeling / validate_silent.ccoptions / keys / OptionKeys.hh
comparative_modeling / validate_silent.ccoptions / keys / out.OptionKeys.gen.hh
vip.ccoptions / keys / cp.OptionKeys.gen.hh
vip.ccoptions / keys / in.OptionKeys.gen.hh
vip.ccoptions / option.hh
vip.ccTracer.hh
design / zinc1_homodimer_design.ccoptions / option.hh
design / zinc1_homodimer_design.ccoptions / keys / OptionKeys.hh
design / zinc1_homodimer_design.ccoptions / keys / packing.OptionKeys.gen.hh
design / zinc1_homodimer_design.ccTracer.hh
design / zinc1_homodimer_design.ccoptions / util.hh
design / zinc1_homodimer_setup.ccoptions / option.hh
design / zinc1_homodimer_setup.ccTracer.hh
design / zinc1_homodimer_setup.ccoptions / util.hh
design / zinc2_homodimer_design.ccoptions / option.hh
design / zinc2_homodimer_design.ccoptions / keys / packing.OptionKeys.gen.hh
design / zinc2_homodimer_design.ccTracer.hh
design / zinc2_homodimer_setup.ccoptions / option.hh
design / zinc2_homodimer_setup.ccTracer.hh
design / zinc_heterodimer_design.ccoptions / keys / in.OptionKeys.gen.hh
design / zinc_heterodimer_design.ccoptions / option.hh
design / zinc_heterodimer_design.ccTracer.hh
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