vector1.functions.hh File Reference

some useful functions for vector1 that I'm tired of rewriting More...

#include <utility/vector1.hh>
#include <utility/numbers.hh>

Namespaces
	utility
	unresizable vector whose size is known at compile time, which may be allocated on the stack, and which indexes from 0.

Functions
template<class T >
void	utility::nmers_worker (utility::vector1< T > const &vec, utility::vector1< T > &combination, utility::vector1< utility::vector1< T > > &power_sets, int const offset, int const kk, int const kk_orig)
	Function invoked by nmers_of (and itself) to generate the power sets of a vector of size kk_orig. More...
template<class T >
utility::vector1 < utility::vector1< T > >	utility::nmers_of (utility::vector1< T > const &vec, int const kk)
	Returns all vector of kk-mer vectors made from combinations of the elements of vec. Returns a vector containing only the empty vector if 0-mers are requested (rather than a zero length vector). More...
template<class T >
T	utility::max (vector1< T > const &input)
	Find the largest value in a vector. More...
template<class T >
T	utility::min (vector1< T > const &input)
	Find the smallest value in a vector. More...
template<class T >
vector1< T >::Size	utility::arg_max (vector1< T > const &input)
	find the index of the largest value in a vector More...
template<class T >
vector1< T >::Size	utility::arg_min (vector1< T > const &input)
	find the index of the smallest value in a vector More...
template<class T >
void	utility::insert_middle (vector1< T > &vect, typename vector1< T >::Size const position, T const new_value, bool expand)
template<class T >
void	utility::arg_greatest_several (vector1< T > const &input, vector1< typename vector1< T >::Size > &arg_list)
	Finds indices of the n largest items in input vector, where n is size of the arg_list vector. The indices are reported in decreasing sorted order by the value of the corresponding position in the input vector. If m is the size of the input vector, then this function is O( m n**2) More...
template<class T >
void	utility::arg_least_several (vector1< T > const &input, vector1< typename vector1< T >::Size > &arg_list)
	Finds indices of the n smallest items in input vector, where n is size of the arg_list vector. The indices are reported in increasing sorted order by the value of the corresponding position in the input vector. If m is the size of the input vector, then this function is O( m n**2) More...
template<typename T >
platform::Size	utility::binary_search_ranges (utility::vector1< T > const &range_array, T query)
	Find the index into the input range array such that range_array[ index ] <= query < range_array[ index + 1 ] or if index+1 would be off the end of the array, then simply the last index in the array (for which range_array[ index ] <= query holds). Each entry in range_array represents the lower boundry (inclusive) for a range, so that range i is defined by ( range_array[ i ], range_array[i+1] - 1 ) except for the last range, which is from range_array[ range_array.size() ] to infinity. T must be a discrete type. range_array must be sorted. range_array[ 1 ] must be as small as the smallest possible query. More...
template<platform::SSize L, typename T >
bool	utility::is_finite (utility::vectorL< L, T > const &vect)
	Are any of the values contained in the vector non-finite (NaN, inf) More...

Detailed Description

some useful functions for vector1 that I'm tired of rewriting

Author

Andrew Leaver-Fay ( aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om )