docking.py File Reference

Namespaces
	docking

Variables
tuple	docking.p = Pose()
tuple	docking.starting_p = Pose()
tuple	docking.dock_prot = DockingProtocol()
int	docking.dock_jump = 1
tuple	docking.scorefxn_low = create_score_function('interchain_cen')
tuple	docking.scorefxn_high = create_score_function('docking')
tuple	docking.scorefxn_high_min = create_score_function('docking','docking_min')
tuple	docking.to_centroid = protocols.simple_moves.SwitchResidueTypeSetMover('centroid')
tuple	docking.to_fullatom = protocols.simple_moves.SwitchResidueTypeSetMover('fa_standard')
tuple	docking.recover_sidechains = protocols.simple_moves.ReturnSidechainMover(starting_p)
tuple	docking.randomize1 = RigidBodyRandomizeMover(p, dock_jump, rigid.partner_upstream)
tuple	docking.randomize2 = RigidBodyRandomizeMover(p, dock_jump, rigid.partner_downstream)
tuple	docking.dock_pert = RigidBodyPerturbMover(dock_jump, 3, 8)
tuple	docking.spin = RigidBodySpinMover( dock_jump )
tuple	docking.slide_into_contact = protocols.docking.DockingSlideIntoContact( dock_jump )
tuple	docking.docking_lowres = DockingLowRes( scorefxn_low, dock_jump )
tuple	docking.docking_highres = DockingHighRes( scorefxn_high_min, dock_jump )
tuple	docking.jd = PyJobDistributor("dock_output", 20, scorefxn_high)
tuple	docking.starting_p_centroid = Pose()