erraser_analysis.py File Reference

Namespaces
	erraser_analysis

Functions
def	erraser_analysis.find_chi_angle_std_pdb
def	erraser_analysis.syn_anti_check

Variables
tuple	erraser_analysis.file_path = os.path.split( os.path.abspath(__file__) )
tuple	erraser_analysis.pdb1 = abspath( sys.argv[1] )
tuple	erraser_analysis.pdb2 = abspath( sys.argv[2] )
int	erraser_analysis.clash1 = 0
int	erraser_analysis.clash2 = 0
tuple	erraser_analysis.START_rna_validate_data = phenix_rna_validate( pdb1 )
list	erraser_analysis.pucker1 = START_rna_validate_data['pucker']
list	erraser_analysis.bond1 = START_rna_validate_data['bond']
list	erraser_analysis.angle1 = START_rna_validate_data['angle']
list	erraser_analysis.suite1 = START_rna_validate_data['suite']
tuple	erraser_analysis.ERRASER_rna_validate_data = phenix_rna_validate( pdb2 )
list	erraser_analysis.pucker2 = ERRASER_rna_validate_data['pucker']
list	erraser_analysis.bond2 = ERRASER_rna_validate_data['bond']
list	erraser_analysis.angle2 = ERRASER_rna_validate_data['angle']
list	erraser_analysis.suite2 = ERRASER_rna_validate_data['suite']
tuple	erraser_analysis.suite_outlier1 = sum( ['!!' in suite[3] for suite in suite1] )
tuple	erraser_analysis.suite_outlier2 = sum( ['!!' in suite[3] for suite in suite2] )
list	erraser_analysis.lines = []
string	erraser_analysis.res = '%4s%2s%4s '
string	erraser_analysis.res1 = '%4s%2s%4s '
tuple	erraser_analysis.delta1 = float(line1[3])
string	erraser_analysis.info1 = '%8.1f/!!'
string	erraser_analysis.info2 = ' OK'
string	erraser_analysis.res2 = '%4s%2s%4s '
tuple	erraser_analysis.delta2 = float(line2[3])
list	erraser_analysis.temp = []
	erraser_analysis.line_split = i
list	erraser_analysis.atoms = line_split[3]
tuple	erraser_analysis.sigma = float(line_split[5])
tuple	erraser_analysis.chi_list1 = find_chi_angle_std_pdb( pdb1 )
tuple	erraser_analysis.chi_list2 = find_chi_angle_std_pdb( pdb2 )
tuple	erraser_analysis.diff = abs(i[1] - j[1])