- l -

• LabelPoseFromResidueSelectorMoverCOP : protocols::fold_from_loops::movers
• LabelPoseFromResidueSelectorMoverOP : protocols::fold_from_loops::movers
• LabelResonanceAP : protocols::noesy_assign
• LabelResonanceCAP : protocols::noesy_assign
• LabelResonanceCOP : protocols::noesy_assign
• LabelResonanceOP : protocols::noesy_assign
• LargeFragWeightAP : protocols::topology_broker::weights
• LargeFragWeightCAP : protocols::topology_broker::weights
• LargeFragWeightCOP : protocols::topology_broker::weights
• LargeFragWeightOP : protocols::topology_broker::weights
• LargeNstructJobInputterAP : protocols::jd2
• LargeNstructJobInputterCAP : protocols::jd2
• LargeNstructJobInputterCOP : protocols::jd2
• LargeNstructJobInputterOP : protocols::jd2
• LarvalJobCOP : protocols::jd3
• LarvalJobOP : protocols::jd3
• LarvalJobs : protocols::jd3
• LayerDesignOperationOP : protocols::flxbb
• LayerSelectorCOP : core::select::residue_selector
• LayerSelectorOP : core::select::residue_selector
• LazyInteractionGraphCOP : core::pack::interaction_graph
• LazyInteractionGraphOP : core::pack::interaction_graph
• LazySilentFileJobInputterOP : protocols::jd2
• LazySilentFilePoseInputStreamOP : core::import_pose::pose_stream
• LegacyAssemblyConstraintsMoverCOP : protocols::legacy_sewing
• LegacyAssemblyConstraintsMoverOP : protocols::legacy_sewing
• LegacyAssemblyMoverCOP : protocols::legacy_sewing
• LegacyAssemblyMoverOP : protocols::legacy_sewing
• LegacyAssemblyScoreFunctionCOP : protocols::legacy_sewing::scoring
• LegacyAssemblyScoreFunctionOP : protocols::legacy_sewing::scoring
• LegacyAssemblyScorerCOP : protocols::legacy_sewing::scoring
• LegacyAssemblyScorerOP : protocols::legacy_sewing::scoring
• LegacyBlosumScorerCOP : protocols::legacy_sewing::scoring
• LegacyBlosumScorerOP : protocols::legacy_sewing::scoring
• LegacyCalciumMotifScorerCOP : protocols::legacy_sewing::scoring
• LegacyCalciumMotifScorerOP : protocols::legacy_sewing::scoring
• LegacyClashScorerCOP : protocols::legacy_sewing::scoring
• LegacyClashScorerOP : protocols::legacy_sewing::scoring
• LegacyEnumerateAssemblyMoverCOP : protocols::legacy_sewing
• LegacyEnumerateAssemblyMoverOP : protocols::legacy_sewing
• LegacyGlobalLengthRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacyGlobalLengthRequirementOP : protocols::legacy_sewing::sampling::requirements
• LegacyGlobalRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacyGlobalRequirementCreatorCOP : protocols::legacy_sewing::sampling::requirements
• LegacyGlobalRequirementCreatorOP : protocols::legacy_sewing::sampling::requirements
• LegacyGlobalRequirementOP : protocols::legacy_sewing::sampling::requirements
• LegacyInterModelMotifScorerCOP : protocols::legacy_sewing::scoring
• LegacyInterModelMotifScorerOP : protocols::legacy_sewing::scoring
• LegacyIntraSegmentRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacyIntraSegmentRequirementCreatorCOP : protocols::legacy_sewing::sampling::requirements
• LegacyIntraSegmentRequirementCreatorOP : protocols::legacy_sewing::sampling::requirements
• LegacyIntraSegmentRequirementOP : protocols::legacy_sewing::sampling::requirements
• LegacyKicSamplerCOP : protocols::loop_modeling::samplers
• LegacyKicSamplerOP : protocols::loop_modeling::samplers
• LegacyMonteCarloAssemblyMoverCOP : protocols::legacy_sewing
• LegacyMonteCarloAssemblyMoverOP : protocols::legacy_sewing
• LegacyMotifScorerCOP : protocols::legacy_sewing::scoring
• LegacyMotifScorerOP : protocols::legacy_sewing::scoring
• LegacyNodeConstraintAssemblyMoverCOP : protocols::legacy_sewing
• LegacyNodeConstraintAssemblyMoverOP : protocols::legacy_sewing
• LegacyPartnerMotifScorerCOP : protocols::legacy_sewing::scoring
• LegacyPartnerMotifScorerOP : protocols::legacy_sewing::scoring
• LegacyRequirementSetCOP : protocols::legacy_sewing::sampling::requirements
• LegacyRequirementSetOP : protocols::legacy_sewing::sampling::requirements
• LegacyResidueRetentionRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacyResidueRetentionRequirementOP : protocols::legacy_sewing::sampling::requirements
• LegacyRootClaimAP : protocols::topology_broker::claims
• LegacyRootClaimCAP : protocols::topology_broker::claims
• LegacyRootClaimCOP : protocols::topology_broker::claims
• LegacyRootClaimOP : protocols::topology_broker::claims
• LegacyRootClaims : protocols::topology_broker::claims
• LegacySegmentDsspRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacySegmentDsspRequirementOP : protocols::legacy_sewing::sampling::requirements
• LegacySegmentLengthRequirementCOP : protocols::legacy_sewing::sampling::requirements
• LegacySegmentLengthRequirementOP : protocols::legacy_sewing::sampling::requirements
• LeGrandSasaCOP : core::scoring::sasa
• LeGrandSasaOP : core::scoring::sasa
• Length : core
• LengthEventCollectorAP : core::pose::datacache
• LengthEventCollectorCAP : core::pose::datacache
• LengthEventCollectorCOP : core::pose::datacache
• LengthEventCollectorOP : core::pose::datacache
• LengthGenAP : core::fragment::picking_old::vall::gen
• LengthGenCAP : core::fragment::picking_old::vall::gen
• LengthGenCOP : core::fragment::picking_old::vall::gen
• LengthGenOP : core::fragment::picking_old::vall::gen
• LengthInResiduesRequirementCOP : protocols::sewing::requirements
• LengthInResiduesRequirementCreatorCOP : protocols::sewing::requirements
• LengthInResiduesRequirementCreatorOP : protocols::sewing::requirements
• LengthInResiduesRequirementOP : protocols::sewing::requirements
• Lengths : protocols::denovo_design::architects
• LengthSquared : core
• LHRepulsiveRampCOP : protocols::antibody
• LHRepulsiveRampLegacyCOP : protocols::antibody
• LHRepulsiveRampLegacyOP : protocols::antibody
• LHRepulsiveRampOP : protocols::antibody
• LHSnugFitLegacyCOP : protocols::antibody
• LHSnugFitLegacyOP : protocols::antibody
• LigandAlignerCOP : protocols::ligand_docking::ga_ligand_dock
• LigandAlignerOP : protocols::ligand_docking::ga_ligand_dock
• LigandAreaCOP : protocols::ligand_docking
• LigandAreaCOPs : protocols::ligand_docking
• LigandAreaOP : protocols::ligand_docking
• LigandAreaOPs : protocols::ligand_docking
• LigandAreas : protocols::ligand_docking
• LigandAssemblyRequirementCOP : protocols::sewing::requirements
• LigandAssemblyRequirementOP : protocols::sewing::requirements
• LigandAssemblyScorerCOP : protocols::sewing::scoring
• LigandAssemblyScorerOP : protocols::sewing::scoring
• LigandBaseProtocolCOP : protocols::ligand_docking
• LigandBaseProtocolOP : protocols::ligand_docking
• LigandBindingAssemblyMoverCOP : protocols::sewing::movers
• LigandBindingAssemblyMoverOP : protocols::sewing::movers
• LigandBindingResPlacerCOP : protocols::sewing::hashing
• LigandBindingResPlacerOP : protocols::sewing::hashing
• LigandClashRequirementCOP : protocols::sewing::requirements
• LigandClashRequirementCreatorCOP : protocols::sewing::requirements
• LigandClashRequirementCreatorOP : protocols::sewing::requirements
• LigandClashRequirementOP : protocols::sewing::requirements
• LigandConformerBuilderCOP : protocols::match::downstream
• LigandConformerBuilderOP : protocols::match::downstream
• LigandConformerCOP : protocols::toolbox::match_enzdes_util
• LigandConformerOP : protocols::toolbox::match_enzdes_util
• LigandConformers : protocols::ligand_docking::ga_ligand_dock
• LigandContactCOP : protocols::sewing::data_storage
• LigandContactOP : protocols::sewing::data_storage
• LigandDesignCOP : protocols::ligand_docking
• LigandDesignOP : protocols::ligand_docking
• LigandDockMainOP : protocols::ligand_docking
• LigandDockProtocolCOP : protocols::ligand_docking
• LigandDockProtocolOP : protocols::ligand_docking
• LigandHashMap : protocols::sewing::hashing
• LigandMetalContactSelectorCOP : protocols::residue_selectors
• LigandMetalContactSelectorOP : protocols::residue_selectors
• LigandMotifSearchCOP : protocols::motifs
• LigandMotifSearchOP : protocols::motifs
• LigandResidueCOP : protocols::sewing::data_storage
• LigandResidueOP : protocols::sewing::data_storage
• LigandScorerCOP : protocols::sewing::scoring
• LigandScorerCreatorCOP : protocols::sewing::scoring
• LigandScorerCreatorOP : protocols::sewing::scoring
• LigandScorerOP : protocols::sewing::scoring
• LigandSegmentCOP : protocols::sewing::data_storage
• LigandSegmentOP : protocols::sewing::data_storage
• LightWeightResidueGraph : core::chemical
• LimitAromaChi2_RotamerSetOperationCOP : protocols::task_operations
• LimitAromaChi2_RotamerSetOperationOP : protocols::task_operations
• LimitAromaChi2OperationCOP : protocols::task_operations
• LimitAromaChi2OperationOP : protocols::task_operations
• LimitHitsPerRotamerFilterCOP : protocols::match::output
• LimitHitsPerRotamerFilterOP : protocols::match::output
• LinearMemoryHPatchInteractionGraph : core::pack::interaction_graph
• LinearMemoryHPatchInteractionGraphOP : core::pack::interaction_graph
• LinearMemoryInteractionGraphCOP : core::pack::interaction_graph
• LinearMemoryInteractionGraphOP : core::pack::interaction_graph
• LinearMemoryNPDHBondInteractionGraph : core::pack::interaction_graph
• LinearMemoryNPDHBondInteractionGraphOP : core::pack::interaction_graph
• LinearMemorySurfaceInteractionGraph : core::pack::interaction_graph
• LinearMemorySurfaceInteractionGraphOP : core::pack::interaction_graph
• LineMinimizationAlgorithmCOP : core::optimization
• LineMinimizationAlgorithmOP : core::optimization
• LinkageConformerMoverCOP : protocols::carbohydrates
• LinkageConformerMoverOP : protocols::carbohydrates
• LinkageConformers : core::chemical::carbohydrates
• LinkerScoreCOP : protocols::sic_dock
• LinkerScoreOP : protocols::sic_dock
• LinkResiduesCOP : protocols::task_operations
• LinkResiduesOP : protocols::task_operations
• Links : core::kinematics
• LIST_TYPE : protocols::cluster::calibur
• LK_BallEnergyCOP : core::scoring::lkball
• LK_BallEnergyOP : core::scoring::lkball
• LK_DomeEnergyCOP : core::scoring::lkball
• LK_DomeEnergyOP : core::scoring::lkball
• LK_DomeHelperCOP : core::pack::guidance_scoreterms::lk_dome
• LK_DomeHelperOP : core::pack::guidance_scoreterms::lk_dome
• LK_DomePackEnergyOP : core::pack::guidance_scoreterms::lk_dome
• LKB_PoseInfo : core::scoring::lkball
• LKB_PoseInfoOP : core::scoring::lkball
• LKB_ResidueInfoCOP : core::scoring::lkball
• LKB_ResidueInfoOP : core::scoring::lkball
• LKB_ResPairMinDataCOP : core::scoring::lkball
• LKB_ResPairMinDataOP : core::scoring::lkball
• LKB_RotamerSetInfo : core::scoring::lkball
• LKB_RotamerSetInfoOP : core::scoring::lkball
• LKBRotamerTrieCOP : core::scoring::lkball::lkbtrie
• LKBRotamerTrieOP : core::scoring::lkball::lkbtrie
• LKD_ResidueInfoCOP : core::scoring::lkball
• LKD_ResidueInfoOP : core::scoring::lkball
• LKD_ResPairMinDataCOP : core::scoring::lkball
• LKD_ResPairMinDataOP : core::scoring::lkball
• LnExpressionCOP : protocols::pack_daemon
• LnExpressionOP : protocols::pack_daemon
• LoadPDBMoverCOP : protocols::simple_moves
• LoadPDBMoverOP : protocols::simple_moves
• LoadUnboundRotMoverCOP : protocols::simple_moves
• LoadUnboundRotMoverOP : protocols::simple_moves
• LocalBackboneMoverCOP : protocols::backbone_moves::local_backbone_mover
• LocalBackboneMoverOP : protocols::backbone_moves::local_backbone_mover
• LocalCoordinateConstraintCOP : core::scoring::constraints
• LocalCoordinateConstraintOP : core::scoring::constraints
• LocalInserter_SimpleMinCOP : protocols::loophash
• LocalInserter_SimpleMinOP : protocols::loophash
• LocalInserterCOP : protocols::loophash
• LocalInserterOP : protocols::loophash
• LocalJobID : protocols::jd3
• LocalPosition : core::environment , protocols::topology_broker::claims
• LocalPositionCOP : core::environment
• LocalPositionOP : core::environment
• LocalPositions : core::environment
• LocalRelaxAP : protocols::relax
• LocalRelaxCAP : protocols::relax
• LocalRelaxCOP : protocols::relax
• LocalRelaxOP : protocols::relax
• LogFilePerturberCOP : protocols::kinematic_closure::perturbers
• LogFilePerturberOP : protocols::kinematic_closure::perturbers
• LogicResidueSelectorCOP : core::select::residue_selector
• LogicResidueSelectorOP : core::select::residue_selector
• LongAxisRotationFreePeptideMoverCOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
• LongAxisRotationFreePeptideMoverOP : protocols::backbone_moves::local_backbone_mover::free_peptide_movers
• LongestContinuousApolarSegmentFilterCOP : protocols::simple_filters
• LongestContinuousApolarSegmentFilterOP : protocols::simple_filters
• LongestContinuousPolarSegmentFilterCOP : protocols::simple_filters
• LongestContinuousPolarSegmentFilterOP : protocols::simple_filters
• LongRangeTwoBodyEnergyCOP : core::scoring::methods
• LongRangeTwoBodyEnergyOP : core::scoring::methods
• LoopAAs : protocols::denovo_design::task_operations
• LoopAnalyzerFilterCOP : protocols::loops::filters
• LoopAnalyzerFilterOP : protocols::loops::filters
• LoopAnalyzerMoverOP : protocols::analysis
• LoopAnchorFeaturesCOP : protocols::features
• LoopAnchorFeaturesOP : protocols::features
• LoopBuilderCOP : protocols::loop_modeling
• LoopBuilderOP : protocols::loop_modeling
• LoopBuildMoverCOP : protocols::loop_build
• LoopBuildMoverOP : protocols::loop_build
• LoopClosePotentialEvaluatorCOP : core::scoring::loop_graph::evaluator
• LoopClosePotentialEvaluatorOP : core::scoring::loop_graph::evaluator
• LoopClosureCOP : protocols::loops::loop_closure::ccd
• LoopClosureOP : protocols::loops::loop_closure::ccd
• LoopCMAP : protocols::loops::loop_mover
• LoopCMCAP : protocols::loops::loop_mover
• LoopCMCOP : protocols::loops::loop_mover
• LoopCMOP : protocols::loops::loop_mover
• LoopCOP : core::scoring::loop_graph , protocols::fldsgn::topology , protocols::loops
• LoopCycleCOP : core::scoring::loop_graph
• LoopCycleOP : core::scoring::loop_graph
• LoopFilterCOP : protocols::loop_modeling::utilities
• LoopFilterOP : protocols::loop_modeling::utilities
• LoopFragmentClaimerAP : protocols::topology_broker
• LoopFragmentClaimerCAP : protocols::topology_broker
• LoopFragmentClaimerCOP : protocols::topology_broker
• LoopFragmentClaimerOP : protocols::topology_broker
• LoopGraphCOP : core::scoring::loop_graph
• LoopGraphOP : core::scoring::loop_graph
• LoopGrowerCOP : protocols::loop_grower
• LoopGrowerOP : protocols::loop_grower
• LoopHashLibraryCOP : protocols::loophash
• LoopHashLibraryLoaderCOP : protocols::loophash
• LoopHashLibraryLoaderOP : protocols::loophash
• LoopHashLibraryOP : protocols::loophash
• LoopHashPerturberCOP : protocols::loop_modeler::perturbers
• LoopHashPerturberOP : protocols::loop_modeler::perturbers
• LoopHashRelaxProtocolCOP : protocols::loophash
• LoopHashRelaxProtocolOP : protocols::loophash
• LoopHashSamplerCOP : protocols::loophash
• LoopHashSamplerOP : protocols::loophash
• LoopInfoVec : protocols::denovo_design::task_operations
• LoopJumpFoldCstCOP : protocols::abinitio
• LoopJumpFoldCstOP : protocols::abinitio
• LoopLengthChangeCOP : protocols::protein_interface_design::movers
• LoopLengthChangeOP : protocols::protein_interface_design::movers
• LoopModelerCOP : protocols::loop_modeler
• LoopModelerOP : protocols::loop_modeler
• LoopmodelWrapperCOP : protocols::loop_build
• LoopmodelWrapperOP : protocols::loop_build
• LoopMover_Perturb_CCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_CCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Refine_BackrubCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_BackrubOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICOP : protocols::loops::loop_mover::refine
• LoopMoverAP : protocols::loops::loop_mover
• LoopMoverCAP : protocols::loops::loop_mover
• LoopMoverCOP : protocols::loop_modeling , protocols::loops::loop_mover
• LoopMoverCOPs : protocols::loop_modeling
• LoopMoverFromCommandLineCOP : protocols::protein_interface_design::movers
• LoopMoverFromCommandLineOP : protocols::protein_interface_design::movers
• LoopMoverGroupCOP : protocols::loop_modeling::utilities
• LoopMoverGroupOP : protocols::loop_modeling::utilities
• LoopMoverOP : protocols::loop_modeling , protocols::loops::loop_mover
• LoopMoverOPs : protocols::loop_modeling
• LoopMovers : protocols::loop_modeling
• LoopOP : core::scoring::loop_graph , protocols::fldsgn::topology , protocols::loops
• LoopPivotsCOP : protocols::kinematic_closure::pivot_pickers
• LoopPivotsOP : protocols::kinematic_closure::pivot_pickers
• LoopProtocolCOP : protocols::loop_modeling
• LoopProtocolOP : protocols::loop_modeling
• LoopRefineInnerCycleContainerCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleContainerOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleOP : protocols::loops::loop_mover::refine
• LoopRelaxMoverCOP : protocols::relax::loop
• LoopRelaxMoverOP : protocols::relax::loop
• LoopRelaxThreadingMoverCOP : protocols::comparative_modeling , protocols::relax::loop
• LoopRelaxThreadingMoverOP : protocols::comparative_modeling , protocols::relax::loop
• LoopRemodelCOP : protocols::protein_interface_design::movers
• LoopRemodelOP : protocols::protein_interface_design::movers
• LoopRlxMoverCOP : protocols::antibody_legacy
• LoopRlxMoverOP : protocols::antibody_legacy
• Loops : protocols::fldsgn::topology
• LoopsCOP : protocols::loops
• LoopsDatabaseDefinerCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerOP : protocols::loops::loops_definers
• LoopsDefinerCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDefinerOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorOP : protocols::loops::loops_definers
• LoopsExplicitDefinerOP : protocols::loops::loops_definers
• LoopsFileDataCOP : protocols::loops
• LoopsFileDataOP : protocols::loops
• LoopsFileDefinerCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorOP : protocols::loops::loops_definers
• LoopsFileDefinerOP : protocols::loops::loops_definers
• LoopsFileIOCOP : protocols::loops
• LoopsFileIOOP : protocols::loops
• LoopsFileLoaderCOP : protocols::loops
• LoopsFileLoaderOP : protocols::loops
• LoopsOP : protocols::loops
• LoopsStringDefinerCOP : protocols::loops::loops_definers
• LoopsStringDefinerOP : protocols::loops::loops_definers
• LREnergyContainerCOP : core::scoring
• LREnergyContainerOP : core::scoring
• LW_Table : core::pose::rna
• lwrg_ED : core::chemical
• lwrg_edge_iter : core::chemical
• lwrg_out_edge_iter : core::chemical
• lwrg_out_edge_iter_pair : core::chemical
• lwrg_VD : core::chemical
• lwrg_vd_iter : core::chemical
• lwrg_vd_pair_iter : core::chemical