- b -

• BackboneGridSamplerHelper : protocols::helical_bundle::BackboneGridSampler
• BackboneGridSamplerHelperCOP : protocols::helical_bundle::BackboneGridSampler
• BackboneGridSamplerHelperOP : protocols::helical_bundle::BackboneGridSampler
• BackboneSegments : protocols::loop_modeler::perturbers::LoopHashPerturber
• BackgroundEdgeList : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > , core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::FirstClassNode< V, E, G >
• BackgroundEdgeListConstIter : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
• BackgroundEdgeListIter : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > , core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G > , core::pack::interaction_graph::FirstClassNode< V, E, G >
• BackgroundEdgeVector : core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::FirstClassNode< V, E, G >
• BackgroundEdgeVectorIter : core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::FirstClassNode< V, E, G >
• BackgroundNodeVector : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > , core::pack::interaction_graph::FirstClassNode< V, E, G >
• Base : protocols::jd2::WriteFileSFB
• BaseClass : protocols::abinitio::ConstraintFragmentSampler , protocols::abinitio::FragmentSampler , protocols::abinitio::Protocol
• BasicDataCache : core::conformation::RotamerSetBase , core::pose::Pose , core::scoring::Energies
• BasicDataCacheOP : core::conformation::RotamerSetBase , core::pose::Pose
• BatchList : protocols::abinitio::HedgeArchive , protocols::jd2::archive::BaseArchiveManager
• BatchStructuresMap : protocols::abinitio::HedgeArchive
• BB_Pos : protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential , protocols::fldsgn::topology::SS_Base , protocols::fldsgn::topology::SS_Info2
• bbdof_list : protocols::splice::ResidueBBDofs
• BBTorsionSRFD : core::fragment::picking_old::vall::VallResidue , protocols::frag_picker::VallResidue
• BBTorsionSRFDOP : core::fragment::picking_old::vall::VallResidue , protocols::frag_picker::VallResidue
• BiasVector : protocols::environment::EnvClaimBroker
• Bin3D : protocols::match::Bool3DGrid , protocols::match::Bool3DGridKinemageWriter , protocols::match::BumpGrid
• Bin6D : protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::VoxelSetIterator
• bin_index_hasher : core::scoring::motif::MotifHash , core::scoring::motif::XformScore , core::scoring::motif::XfragSet
• BIOPConstIterator : protocols::forge::build::BuildManager , protocols::forge::components::VarLengthBuild
• BIOPIterator : protocols::forge::build::BuildManager
• BlosumMatrix : protocols::sparta::Sparta::SpartaLib
• BluePrint : protocols::fldsgn::BluePrintBDR , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign , protocols::task_operations::DsspDesignOperation
• BluePrintOP : protocols::fldsgn::BluePrintBDR , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::SheetConstraintGenerator , protocols::flxbb::FlxbbDesign , protocols::task_operations::DsspDesignOperation
• BondAngleKey : protocols::backrub::BackrubSegment
• Book : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::concepts::Library< Books > , core::fragment::picking_old::vall::VallSections
• BookConstIterator : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::concepts::Library< Books > , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary
• BookIterator : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::concepts::Library< Books > , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary
• BookmarkConstIterator : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• BookmarkIterator : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• Bookmarks : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library > , core::fragment::picking_old::vall::VallLibrarian
• BoolDataCacheBoolOP : protocols::protein_interface_design::movers::SaveAndRetrieveSidechains
• BoolVector : core::select::residue_selector::CachedResidueSubset
• BoolVectorOP : core::select::residue_selector::CachedResidueSubset
• BoundedCollectorCOP : protocols::frag_picker::BoundedCollector< StrictWeakOrdering >
• BoundedCollectorOP : protocols::frag_picker::BoundedCollector< StrictWeakOrdering >
• BoundingBox : protocols::match::Bool3DGrid , protocols::match::BumpGrid , protocols::match::downstream::ActiveSiteGrid , protocols::match::HitHasher , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::Matcher , protocols::match::MatcherTask , protocols::match::OccupiedSpaceHash , protocols::match::VoxelSetIterator , protocols::nmr::pcs::PCSLigandTransformMover
• BoundingSphere : core::pack::interaction_graph::OnTheFlyNode , core::pack::interaction_graph::SymmOnTheFlyNode
• BrokeredJumpDataCOP : protocols::environment::EnvClaimBroker
• BrokeredJumpDataOP : protocols::environment::EnvClaimBroker
• BufferMap : protocols::jd2::SingleFileBuffer
• Buffers : protocols::jd2::MpiFileBuffer
• BuildInstructionCAPs : protocols::forge::build::BuildInstruction
• BuildInstructionOP : protocols::fldsgn::BluePrintBDR , protocols::forge::components::BDR , protocols::forge::remodel::RemodelMover
• BuildInstructionOPs : protocols::forge::build::BuildManager
• BuildManager : protocols::fldsgn::BluePrintBDR , protocols::forge::components::BDR , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelMover
• BundleParameters : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix
• BundleParametersCOP : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix
• BundleParametersOP : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix
• BundleParametersSet : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix
• BundleParametersSetCOP : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix
• BundleParametersSetOP : protocols::helical_bundle::BundleGridSampler , protocols::helical_bundle::MakeBundle , protocols::helical_bundle::MakeBundleHelix , protocols::helical_bundle::PerturbBundle , protocols::helical_bundle::PerturbBundleHelix