ThisApplication Member List

This is the complete list of members for ThisApplication, including all inherited members.

aligned_	ThisApplication	private
aligned_seq_	ThisApplication	private
analyze_tree(kinematics::FoldTree f, SecondaryStructureOP)	ThisApplication
Cuts typedef	ThisApplication	private
cuts_	ThisApplication	private
frag_length_	ThisApplication	private
fragset_	ThisApplication	private
Jumps typedef	ThisApplication	private
jumps_	ThisApplication	private
mapping_	ThisApplication	private
Pairing typedef	ThisApplication	private
pick_frags()	ThisApplication
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
register_options()	ThisApplication	static
run()	ThisApplication
run()	ThisApplication
setup()	ThisApplication
show_cuts(std::ostream &)	ThisApplication
show_jumps(std::ostream &)	ThisApplication
target_seq_	ThisApplication	private
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()=default	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()=default	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()=default	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication	inline
ThisApplication()	ThisApplication