internal_coordinates.py File Reference

Namespaces
	internal_coordinates

Functions
def	internal_coordinates.length (model, index)
def	internal_coordinates.angle (model, index)
def	internal_coordinates.torsion (model, index)

Variables
	internal_coordinates.parser = argparse.ArgumentParser()
	internal_coordinates.nargs
	internal_coordinates.arguments = parser.parse_args()
list	internal_coordinates.backbones = []
	internal_coordinates.loop = pdb.Model(path)
	internal_coordinates.backbone = loop.select_atoms('N', 'CA', 'C')
	internal_coordinates.wrap = len(backbones[0].coordinates)
list	internal_coordinates.indices = backbones[0].indices()
list	internal_coordinates.lengths = [length(backbone, index) for backbone in backbones]
list	internal_coordinates.readout = lengths[0], lengths[1], lengths[0] - lengths[1]
list	internal_coordinates.angles = [angle(backbone, index) for backbone in backbones]
list	internal_coordinates.torsions = [torsion(backbone, index) for backbone in backbones]