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| def | arls_impl.chain_from_iterables (iterables) |
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| def | arls_impl.find_file (regex, paths, required=True) |
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| def | arls_impl.find_programs (options) |
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| def | arls_impl.read_input_list (infile) |
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| def | arls_impl.get_procs_per_case (docking_cases, options) |
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| def | arls_impl.write_setup_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_common_flags (outfile, options, docking_cases) |
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| def | arls_impl.write_rpkmin_flags (outfile, options, docking_cases) |
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| def | arls_impl.write_dock_flags (outfile, options, docking_cases) |
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| def | arls_impl.write_minnat_flags (outfile, options, docking_cases) |
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| def | arls_impl.write_rpkmin_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_tarball_pre_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_dock_condor_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_dock_bash_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_concat_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_analysis_script (outfile, options, progs, docking_cases) |
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| def | arls_impl.write_if_not_exists (filename, options, function, *func_args, **func_kwargs) |
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| def | arls_impl.main (argv) |
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