PhProtocol Member List

This is the complete list of members for PhProtocol, including all inherited members.

apply(core::pose::Pose &pose)	PhProtocol	inlinevirtual
apply(core::pose::Pose &pose) override	PhProtocol	inline
curr_pose_	PhProtocol	private
final_res_list_	PhProtocol	private
finalize_res_list(core::pose::Pose &pose)	PhProtocol	inline
fresh_instance() const	PhProtocol	inlinevirtual
fresh_instance() const override	PhProtocol	inline
get_name() const	PhProtocol	inline
get_name() const override	PhProtocol	inline
init_options()	PhProtocol	inline
ipka_	PhProtocol	private
method_code_	PhProtocol	private
neighbor_count_	PhProtocol	private
old_pose_	PhProtocol	private
pdb_chain_no_	PhProtocol	private
pdb_file_name_	PhProtocol	private
pdb_res_nos_	PhProtocol	private
pH_neighbor_pack_	PhProtocol	private
pH_prepack_	PhProtocol	private
pH_relax_	PhProtocol	private
PhProtocol()	PhProtocol	inline
PhProtocol()	PhProtocol	inline
pka_all_	PhProtocol	private
pka_rad_	PhProtocol	private
pka_value_	PhProtocol	private
prepack_pose(core::pose::Pose &pose, std::string const &pdbname)	PhProtocol	inline
print_hbonds(core::pose::Pose &pose)	PhProtocol	inline
refine_stage_	PhProtocol	private
reinitialize_for_each_job() const	PhProtocol	inlinevirtual
reinitialize_for_each_job() const override	PhProtocol	inline
reinitialize_for_new_input() const	PhProtocol	inlinevirtual
reinitialize_for_new_input() const override	PhProtocol	inline
relax_pose(core::pose::Pose &pose, std::string const &pdbname)	PhProtocol	inline
rotamer_prot_stats_	PhProtocol	private
set_chain_no(std::string const &pdb_chain_no)	PhProtocol	inline
set_default()	PhProtocol	inline
set_file_name(std::string const &pdb_file_name)	PhProtocol	inline
set_pH_neighbor_pack(bool pH_neighbor_pack)	PhProtocol	inline
set_pH_prepack(bool pH_prepack)	PhProtocol	inline
set_pH_relax(bool pH_relax)	PhProtocol	inline
set_pka_all(bool pka_all)	PhProtocol	inline
set_pka_rad(core::Real pka_rad)	PhProtocol	inline
set_res_no(utility::vector1< core::Real > const &pdb_res_nos)	PhProtocol	inline
set_rotamer_prot_stats(bool rotamer_prot_stats)	PhProtocol	inline
shift_pH_	PhProtocol	private
titrate_pH(core::pose::Pose &pose, core::Size res_no, core::Real start_pH, core::Real stop_pH, core::Real step_size)	PhProtocol	inline
titration_successful_	PhProtocol	private
~PhProtocol()	PhProtocol	inlinevirtual
~PhProtocol() override=default	PhProtocol