kic_runner.py File Reference

Classes
class	kic_runner.ParseIterations

Namespaces
	kic_runner

Functions
def	kic_runner.setup_hook ()
def	kic_runner.find_rosetta_installation ()

Variables
dictionary	kic_runner.name_abbreviations
list	kic_runner.algorithm_choices
string	kic_runner.default_name = 'sandbox'
string	kic_runner.default_algorithm = 'refactor'
string	kic_runner.default_structure = 'structures/kic/1srp.pdb'
	kic_runner.parser = argparse.ArgumentParser()
	kic_runner.default
	kic_runner.action
	kic_runner.dest
	kic_runner.choices
	kic_runner.ParseIterations
	kic_runner.nargs
	kic_runner.type
	kic_runner.float
	kic_runner.job = scripting.Job()
	kic_runner.arguments = parser.parse_args()
	kic_runner.pdb
	kic_runner.commit
	kic_runner.shell
	kic_runner.job_id
	kic_runner.background
	kic_runner.overwrite
string	kic_runner.loop_path = os.path.splitext(arguments.structure)[0] + '.loop'
	kic_runner.loop
def	kic_runner.rosetta_path = find_rosetta_installation()
	kic_runner.rosetta_subpath = lambda subpath: os.path.join(rosetta_path, subpath)
	kic_runner.command = rosetta_subpath('source/bin/loopmodel')
	kic_runner.database = rosetta_subpath('database')
string	kic_runner.loop_file = os.path.splitext(arguments.structure)[0] + '.loop'
string	kic_runner.remodel = 'perturb_kic'
string	kic_runner.refine = 'refine_kic'