|
| dictionary | run_backbone.name_abbreviations |
| |
| dictionary | run_backbone.names = name_abbreviations.keys() |
| |
| string | run_backbone.default_name = 'sandbox' |
| |
| string | run_backbone.closure_moves = 'naive', 'balanced', |
| |
| string | run_backbone.sampling_moves = 'uniform', 'rama', 'walking', 'vicinity' |
| |
| string | run_backbone.breadth_moves = 'uniform', 'omega', 'rama' |
| |
| string | run_backbone.score_functions = 'rama', 'off' |
| |
| string | run_backbone.default_closure_move = 'naive' |
| |
| string | run_backbone.default_sampling_move = 'uniform' |
| |
| string | run_backbone.default_breadth_move = 'omega' |
| |
| string | run_backbone.default_score_function = 'off' |
| |
| string | run_backbone.default_structure = 'structures/linear/6.symmetry.pdb' |
| |
| dictionary | run_backbone.default_pivots |
| |
| string | run_backbone.command = 'git', 'rev-parse', '--show-toplevel' |
| |
| | run_backbone.output = check_output(command, stderr=devnull) |
| |
| | run_backbone.rosetta_path = output.strip() |
| |
| | run_backbone.rosetta_subpath = lambda subpath: os.path.join(rosetta_path, subpath) |
| |
| | run_backbone.parser = argparse.ArgumentParser() |
| |
| | run_backbone.default |
| |
| | run_backbone.action |
| |
| | run_backbone.dest |
| |
| | run_backbone.choices |
| |
| | run_backbone.type |
| |
| | run_backbone.int |
| |
| | run_backbone.nargs |
| |
| | run_backbone.smart_int |
| |
| | run_backbone.float |
| |
| | run_backbone.job = scripting.Job() |
| |
| | run_backbone.arguments = parser.parse_args() |
| |
| | run_backbone.background |
| |
| | run_backbone.overwrite |
| |
| | run_backbone.foreground |
| |
| | run_backbone.hook |
| |
| | run_backbone.dry_run |
| |
| | run_backbone.pivots |
| |
| | run_backbone.pdb_string |
| |
| | run_backbone.pivot_string |
| |
