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| def | enumerate_junctions.generate_dhrs_txt_file (dhr_location) |
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| def | enumerate_junctions.get_single_junction (junction_fn) |
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| def | enumerate_junctions.generate_junctions_txt_file (junction_location, options) |
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| def | enumerate_junctions.get_terminal_pdb (options, dhrs_dict) |
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| def | enumerate_junctions.get_all_dhrs (dhr_run_location) |
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| def | enumerate_junctions.get_all_junctions (junction_run_location, dhrs_dict) |
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| def | enumerate_junctions.generate_all_dhr_attach_permutations (design, dhrs_dict, n_term_min, n_term_max, c_term_min, c_term_max, output_wo_extension) |
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| def | enumerate_junctions.generate_all_junction_attach_permutations (design, dhrs_dict, n_term_junc_dict, c_term_junc_dict, options) |
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| def | enumerate_junctions.generate_all_terminal_pdb_permutations (design, terminal_pdb, dhrs_dict, options) |
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| def | enumerate_junctions.generate_starting_round_structures (n_term_junc_dict, dhrs_dict, options) |
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| def | enumerate_junctions.enumerate_tranform_db (dhrs_dict, n_term_junc_dict, c_term_junc_dict, options) |
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| def | enumerate_junctions.generate_structures (design, n_term_junc_dict, c_term_junc_dict, dhrs_dict, options, queue, terminal_pdb, output_wo_extension, recursive) |
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| def | enumerate_junctions.listener (q, options) |
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| def | enumerate_junctions.generate_structures_wrapper (data, q) |
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| | enumerate_junctions.parser = ArgumentParser( description="" ) |
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| | enumerate_junctions.type |
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| | enumerate_junctions.str |
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| | enumerate_junctions.default |
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| | enumerate_junctions.help |
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| | enumerate_junctions.bool |
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| | enumerate_junctions.False |
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| | enumerate_junctions.None |
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| | enumerate_junctions.int |
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| | enumerate_junctions.True |
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| | enumerate_junctions.options = parser.parse_args() |
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| string | enumerate_junctions.current_machine = "jojo" |
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| string | enumerate_junctions.DHR_location_jojo = "/home/brunette/DBs/repeats/DHRs" |
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| string | enumerate_junctions.Junction_location_jojo = "/home/brunette/DBs/building_components/DHR_junctions_all_filters_plus_L1" |
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| string | enumerate_junctions.DHR_location_hyak = "/gscratch/baker/brunette/DBs/repeats/DHRs" |
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| string | enumerate_junctions.Junction_location_hyak = "/gscratch/baker/brunette/DBs/repeats/junctions" |
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| string | enumerate_junctions.DHR_location_digs = "/work/brunette/DBs/repeats/DHRs" |
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| string | enumerate_junctions.Junction_location_digs = "/work/brunette/DBs/repeats/junctions" |
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| string | enumerate_junctions.DHR_location_short = "" |
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| string | enumerate_junctions.Junction_location_short = "" |
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| string | enumerate_junctions.dhr_location = DHR_location_jojo |
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| string | enumerate_junctions.junction_location = Junction_location_jojo |
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| string | enumerate_junctions.dhr_run_location = DHR_location_jojo |
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| string | enumerate_junctions.junction_run_location = Junction_location_jojo |
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| | enumerate_junctions.manager = mp.Manager() |
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| | enumerate_junctions.q = manager.Queue() |
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| | enumerate_junctions.pool = mp.Pool( processes = options.n_core ) |
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| | enumerate_junctions.watcher = pool.apply_async(listener, (q,options,) ) |
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| def | enumerate_junctions.dhrs_dict = get_all_dhrs(dhr_run_location) |
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| | enumerate_junctions.n_term_junc_dict |
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| | enumerate_junctions.c_term_junc_dict |
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| | enumerate_junctions.terminal_pdb = None |
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| def | enumerate_junctions.designs_rd1 = generate_starting_round_structures(n_term_junc_dict,dhrs_dict,options) |
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| list | enumerate_junctions.designs_rd2 = [] |
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| | enumerate_junctions.tmp_data = Pool_data(tmp_design,n_term_junc_dict,c_term_junc_dict,dhrs_dict,options,terminal_pdb,True,True) |
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