cm.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::cm
	basic::options::OptionKeys::cm::sanitize
	basic::options::OptionKeys::cm::hybridize

Variables
BooleanOptionKey const	basic::options::OptionKeys::cm::cm
BooleanOptionKey const	basic::options::OptionKeys::cm::sanitize::sanitize
IntegerOptionKey const	basic::options::OptionKeys::cm::sanitize::num_fragments
RealOptionKey const	basic::options::OptionKeys::cm::sanitize::cst_weight_pair
RealOptionKey const	basic::options::OptionKeys::cm::sanitize::cst_weight_coord
BooleanOptionKey const	basic::options::OptionKeys::cm::start_models_only
StringOptionKey const	basic::options::OptionKeys::cm::aln_format
BooleanOptionKey const	basic::options::OptionKeys::cm::recover_side_chains
FileVectorOptionKey const	basic::options::OptionKeys::cm::steal_extra_residues
StringOptionKey const	basic::options::OptionKeys::cm::loop_mover
IntegerOptionKey const	basic::options::OptionKeys::cm::loop_close_level
IntegerOptionKey const	basic::options::OptionKeys::cm::min_loop_size
IntegerOptionKey const	basic::options::OptionKeys::cm::max_loop_rebuild
RealOptionKey const	basic::options::OptionKeys::cm::loop_rebuild_filter
RealOptionKey const	basic::options::OptionKeys::cm::aln_length_filter_quantile
IntegerOptionKey const	basic::options::OptionKeys::cm::aln_length_filter
StringVectorOptionKey const	basic::options::OptionKeys::cm::seq_score
StringOptionKey const	basic::options::OptionKeys::cm::aligner
RealOptionKey const	basic::options::OptionKeys::cm::min_gap_open
RealOptionKey const	basic::options::OptionKeys::cm::max_gap_open
RealOptionKey const	basic::options::OptionKeys::cm::min_gap_extend
RealOptionKey const	basic::options::OptionKeys::cm::max_gap_extend
IntegerOptionKey const	basic::options::OptionKeys::cm::nn
FileVectorOptionKey const	basic::options::OptionKeys::cm::ev_map
FileVectorOptionKey const	basic::options::OptionKeys::cm::hh_map
IntegerVectorOptionKey const	basic::options::OptionKeys::cm::seeds
IntegerOptionKey const	basic::options::OptionKeys::cm::nremain_reset
RealVectorOptionKey const	basic::options::OptionKeys::cm::quota_per_silent
RealOptionKey const	basic::options::OptionKeys::cm::similarity_cut
RealOptionKey const	basic::options::OptionKeys::cm::similarity_limit
RealOptionKey const	basic::options::OptionKeys::cm::refsimilarity_cut
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::hybridize
IntegerVectorOptionKey const	basic::options::OptionKeys::cm::hybridize::starting_template
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::realign_domains
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::realign_domains_stage2
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::add_non_init_chunks
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_increase_cycles
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::stage2_increase_cycles
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::stage2min_increase_cycles
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_probability
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::skip_stage2
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::no_global_frame
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::linmin_only
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::relax
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::frag_weight_aligned
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::max_registry_shift
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::frag_1mer_insertion_weight
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::small_frag_insertion_weight
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::big_frag_insertion_weight
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::auto_frag_insertion_weight
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_1_cycles
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_2_cycles
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_3_cycles
IntegerOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_4_cycles
RealOptionKey const	basic::options::OptionKeys::cm::hybridize::stage2_temperature
StringOptionKey const	basic::options::OptionKeys::cm::hybridize::stage1_4_cenrot_score
BooleanOptionKey const	basic::options::OptionKeys::cm::hybridize::include_loop_ss_chunks

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)