make_symmdef_file_denovo.py File Reference

Namespaces
	make_symmdef_file_denovo

Variables
int	make_symmdef_file_denovo.length = -1
	make_symmdef_file_denovo.pos = argv.index('-symm_type')
	make_symmdef_file_denovo.symm_type_name = argv[pos+1]
	make_symmdef_file_denovo.nsub = argv[pos+1]
int	make_symmdef_file_denovo.subsystem_size = 0
string	make_symmdef_file_denovo.slide_type = ""
string	make_symmdef_file_denovo.slide_criteria_type = ""
string	make_symmdef_file_denovo.slide_order = ""
string	make_symmdef_file_denovo.slide_criteria_val = ""
	make_symmdef_file_denovo.subunits = int(nsub)
list	make_symmdef_file_denovo.interfaces = []
int	make_symmdef_file_denovo.num_interfaces = 0
string	make_symmdef_file_denovo.E_string = "E = "+ nsub + "*VRT0001"
int	make_symmdef_file_denovo.interface_num = 0
int	make_symmdef_file_denovo.jump_num = sub+1
int	make_symmdef_file_denovo.vrt_start_num = sub+1
int	make_symmdef_file_denovo.vrt_stop_num = sub+2
string	make_symmdef_file_denovo.jump_start = 'VRT' + str(vrt_start_num).zfill(4)
string	make_symmdef_file_denovo.jump_stop = 'VRT' + str(vrt_stop_num).zfill(4)
	make_symmdef_file_denovo.rotation_z = float(2*360.000/(float(subunits)))
int	make_symmdef_file_denovo.z_jump = subunits/2
	make_symmdef_file_denovo.z_random_rotation = float(360.000/float(subunits))
	make_symmdef_file_denovo.rot_z1 = float(360.000/float(subunits))
float	make_symmdef_file_denovo.rot_z2 = 360.000 -2*rot_z1
float	make_symmdef_file_denovo.rotation_z2 = 360.000 - 2*rotation_z