tcrmodel.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::tcrmodel

Variables
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::tcrmodel
FileOptionKey const	basic::options::OptionKeys::tcrmodel::ignore_list
RealOptionKey const	basic::options::OptionKeys::tcrmodel::blastp_identity_cutoff
RealOptionKey const	basic::options::OptionKeys::tcrmodel::template_identity_cutoff
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::include_ab_templates
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::dump_templates
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::skip_modeling
StringOptionKey const	basic::options::OptionKeys::tcrmodel::ab_template_db_path
StringOptionKey const	basic::options::OptionKeys::tcrmodel::tcr_template_db_path
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::minimize_model
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::relax_model
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3a
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::remodel_loop_cdr3b
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3a_loop
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3b_loop
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3a_loop
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3b_loop
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::remodel_tcr_cdr3_loops
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::refine_tcr_cdr3_loops
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::refine_all_tcr_cdr_loops
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::use_user_templates
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_framework_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_framework_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_germline_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_germline_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr1_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr2_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr3_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_orientation_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_orientation_template_id
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_framework_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_framework_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_germline_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_germline_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr1_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr1_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr2_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr2_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_cdr3_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_cdr3_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::alpha_orientation_template_pdb
StringOptionKey const	basic::options::OptionKeys::tcrmodel::beta_orientation_template_pdb
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::use_alpha_germline_templates
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::use_beta_germline_templates
BooleanOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr1a
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr2a
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr3a
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr1b
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr2b
StringOptionKey const	basic::options::OptionKeys::tcrmodel::assign_cdr3b
StringOptionKey const	basic::options::OptionKeys::tcrmodel::anarci_path

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)