optE.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::optE
	basic::options::OptionKeys::optE::rescore

Variables
BooleanOptionKey const	basic::options::OptionKeys::optE::optE
StringOptionKey const	basic::options::OptionKeys::optE::load_from_silent
StringOptionKey const	basic::options::OptionKeys::optE::data_in
StringOptionKey const	basic::options::OptionKeys::optE::data_out
StringOptionKey const	basic::options::OptionKeys::optE::weights
StringVectorOptionKey const	basic::options::OptionKeys::optE::fix
FileOptionKey const	basic::options::OptionKeys::optE::free
FileOptionKey const	basic::options::OptionKeys::optE::fixed
FileOptionKey const	basic::options::OptionKeys::optE::parse_tagfile
FileOptionKey const	basic::options::OptionKeys::optE::constant_logic_taskops_file
BooleanOptionKey const	basic::options::OptionKeys::optE::optE_soft_rep
BooleanOptionKey const	basic::options::OptionKeys::optE::no_hb_env_dependence
BooleanOptionKey const	basic::options::OptionKeys::optE::no_hb_env_dependence_DNA
BooleanOptionKey const	basic::options::OptionKeys::optE::optE_no_protein_fa_elec
BooleanOptionKey const	basic::options::OptionKeys::optE::include_intra_res_protein
BooleanOptionKey const	basic::options::OptionKeys::optE::centroid_rot
BooleanOptionKey const	basic::options::OptionKeys::optE::centroid_rot_min
BooleanOptionKey const	basic::options::OptionKeys::optE::design_first
IntegerOptionKey const	basic::options::OptionKeys::optE::n_design_cycles
BooleanOptionKey const	basic::options::OptionKeys::optE::recover_nat_rot
FileOptionKey const	basic::options::OptionKeys::optE::component_weights
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_nat_aa
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_nat_rot
FileOptionKey const	basic::options::OptionKeys::optE::optimize_ligand_rot
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_pssm
FileOptionKey const	basic::options::OptionKeys::optE::optimize_dGbinding
FileOptionKey const	basic::options::OptionKeys::optE::optimize_ddG_bind_correlation
FileOptionKey const	basic::options::OptionKeys::optE::optimize_ddGmutation
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_ddGmutation_straight_mean
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_ddGmutation_boltzman_average
RealOptionKey const	basic::options::OptionKeys::optE::exclude_badrep_ddGs
BooleanOptionKey const	basic::options::OptionKeys::optE::pretend_no_ddG_repulsion
FileOptionKey const	basic::options::OptionKeys::optE::optimize_decoy_discrimination
StringOptionKey const	basic::options::OptionKeys::optE::normalize_decoy_score_spread
BooleanOptionKey const	basic::options::OptionKeys::optE::ramp_nativeness
IntegerOptionKey const	basic::options::OptionKeys::optE::n_top_natives_to_optimize
RealOptionKey const	basic::options::OptionKeys::optE::approximate_decoy_entropy
BooleanOptionKey const	basic::options::OptionKeys::optE::repack_and_minimize_decoys
BooleanOptionKey const	basic::options::OptionKeys::optE::repack_and_minimize_input_structures
IntegerOptionKey const	basic::options::OptionKeys::optE::output_top_n_new_decoys
FileOptionKey const	basic::options::OptionKeys::optE::optimize_ligand_discrimination
BooleanOptionKey const	basic::options::OptionKeys::optE::no_design
BooleanOptionKey const	basic::options::OptionKeys::optE::sqrt_pssm
RealOptionKey const	basic::options::OptionKeys::optE::min_decoy_rms_to_native
RealOptionKey const	basic::options::OptionKeys::optE::max_rms_from_native
BooleanOptionKey const	basic::options::OptionKeys::optE::optimize_starting_free_weights
FileOptionKey const	basic::options::OptionKeys::optE::wrap_dof_optimization
RealOptionKey const	basic::options::OptionKeys::optE::randomly_perturb_starting_free_weights
RealOptionKey const	basic::options::OptionKeys::optE::inv_kT_natrot
RealOptionKey const	basic::options::OptionKeys::optE::inv_kT_nataa
RealOptionKey const	basic::options::OptionKeys::optE::inv_kT_natstruct
BooleanOptionKey const	basic::options::OptionKeys::optE::mpi_weight_minimization
BooleanOptionKey const	basic::options::OptionKeys::optE::dont_use_reference_energies
IntegerOptionKey const	basic::options::OptionKeys::optE::number_of_swarm_particles
IntegerOptionKey const	basic::options::OptionKeys::optE::number_of_swarm_cycles
FileOptionKey const	basic::options::OptionKeys::optE::constrain_weights
BooleanOptionKey const	basic::options::OptionKeys::optE::fit_reference_energies_to_aa_profile_recovery
FileOptionKey const	basic::options::OptionKeys::optE::starting_refEs
BooleanOptionKey const	basic::options::OptionKeys::optE::repeat_swarm_optimization_until_fitness_improves
BooleanOptionKey const	basic::options::OptionKeys::optE::design_with_minpack
BooleanOptionKey const	basic::options::OptionKeys::optE::design_with_fast_design
BooleanOptionKey const	basic::options::OptionKeys::optE::design_with_offrotpack
BooleanOptionKey const	basic::options::OptionKeys::optE::limit_bad_scores
BooleanOptionKey const	basic::options::OptionKeys::optE::no_design_pdb_output
BooleanOptionKey const	basic::options::OptionKeys::optE::rescore::rescore
FileOptionKey const	basic::options::OptionKeys::optE::rescore::weights
IntegerOptionKey const	basic::options::OptionKeys::optE::rescore::context_round
FileOptionKey const	basic::options::OptionKeys::optE::rescore::outlog
BooleanOptionKey const	basic::options::OptionKeys::optE::rescore::measure_sequence_recovery

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)