cluster.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::cluster
	basic::options::OptionKeys::cluster::energy_based_clustering

Variables
BooleanOptionKey const	basic::options::OptionKeys::cluster::cluster
BooleanOptionKey const	basic::options::OptionKeys::cluster::lite
RealOptionKey const	basic::options::OptionKeys::cluster::input_score_filter
RealOptionKey const	basic::options::OptionKeys::cluster::output_score_filter
IntegerVectorOptionKey const	basic::options::OptionKeys::cluster::exclude_res
RealOptionKey const	basic::options::OptionKeys::cluster::thinout_factor
RealOptionKey const	basic::options::OptionKeys::cluster::radius
IntegerOptionKey const	basic::options::OptionKeys::cluster::limit_cluster_size
RealOptionKey const	basic::options::OptionKeys::cluster::limit_cluster_size_percent
RealOptionKey const	basic::options::OptionKeys::cluster::random_limit_cluster_size_percent
IntegerOptionKey const	basic::options::OptionKeys::cluster::limit_clusters
IntegerOptionKey const	basic::options::OptionKeys::cluster::limit_total_structures
IntegerOptionKey const	basic::options::OptionKeys::cluster::max_total_cluster
BooleanOptionKey const	basic::options::OptionKeys::cluster::gdtmm
BooleanOptionKey const	basic::options::OptionKeys::cluster::skip_align
IntegerOptionKey const	basic::options::OptionKeys::cluster::max_rms_matrix
BooleanOptionKey const	basic::options::OptionKeys::cluster::rna_P
BooleanOptionKey const	basic::options::OptionKeys::cluster::sort_groups_by_energy
BooleanOptionKey const	basic::options::OptionKeys::cluster::sort_groups_by_size
BooleanOptionKey const	basic::options::OptionKeys::cluster::remove_singletons
BooleanOptionKey const	basic::options::OptionKeys::cluster::export_only_low
BooleanOptionKey const	basic::options::OptionKeys::cluster::remove_highest_energy_member
BooleanOptionKey const	basic::options::OptionKeys::cluster::idealize_final_structures
IntegerOptionKey const	basic::options::OptionKeys::cluster::limit_dist_matrix
BooleanOptionKey const	basic::options::OptionKeys::cluster::make_ensemble_cst
BooleanOptionKey const	basic::options::OptionKeys::cluster::hotspot_hash
BooleanOptionKey const	basic::options::OptionKeys::cluster::loops
RealOptionKey const	basic::options::OptionKeys::cluster::population_weight
StringOptionKey const	basic::options::OptionKeys::cluster::template_scores
IntegerOptionKey const	basic::options::OptionKeys::cluster::K_level
RealVectorOptionKey const	basic::options::OptionKeys::cluster::K_radius
IntegerVectorOptionKey const	basic::options::OptionKeys::cluster::K_n_cluster
StringVectorOptionKey const	basic::options::OptionKeys::cluster::K_style
IntegerOptionKey const	basic::options::OptionKeys::cluster::K_n_sub
IntegerOptionKey const	basic::options::OptionKeys::cluster::K_deque_size
IntegerOptionKey const	basic::options::OptionKeys::cluster::K_deque_level
BooleanOptionKey const	basic::options::OptionKeys::cluster::K_redundant
BooleanOptionKey const	basic::options::OptionKeys::cluster::K_not_fit_xyz
BooleanOptionKey const	basic::options::OptionKeys::cluster::K_save_headers
RealOptionKey const	basic::options::OptionKeys::cluster::score_diff_cut
BooleanOptionKey const	basic::options::OptionKeys::cluster::auto_tune
BooleanOptionKey const	basic::options::OptionKeys::cluster::write_centers
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::energy_based_clustering
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::prerelax
IntegerOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::relax_rounds
StringOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cluster_by
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::use_CB
RealOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cluster_radius
IntegerVectorOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::residues_to_ignore
IntegerVectorOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::chains_to_ignore
IntegerOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::limit_structures_per_cluster
IntegerOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::limit_clusters
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cyclic
IntegerOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_mirroring
RealOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_threshold
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cluster_cyclic_permutations
IntegerOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_permutation_offset
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::perform_ABOXYZ_bin_analysis
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::mutate_to_ala
IntegerVectorOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::disulfide_positions
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::homooligomer_swap
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::silent_output
FileVectorOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::cst_file
StringVectorOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::extra_rms_atoms
BooleanOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::rebuild_all_in_dihedral_mode
FileOptionKey const	basic::options::OptionKeys::cluster::energy_based_clustering::alternative_score_file

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)