loops.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::loops
	basic::options::OptionKeys::loops::ccd

Variables
BooleanOptionKey const	basic::options::OptionKeys::loops::loops
StringOptionKey const	basic::options::OptionKeys::loops::cen_weights
StringOptionKey const	basic::options::OptionKeys::loops::cen_patch
FileOptionKey const	basic::options::OptionKeys::loops::input_pdb
StringVectorOptionKey const	basic::options::OptionKeys::loops::loop_file
FileOptionKey const	basic::options::OptionKeys::loops::extended_loop_file
FileOptionKey const	basic::options::OptionKeys::loops::mm_loop_file
BooleanOptionKey const	basic::options::OptionKeys::loops::fix_natsc
BooleanOptionKey const	basic::options::OptionKeys::loops::refine_only
BooleanOptionKey const	basic::options::OptionKeys::loops::fast
FileOptionKey const	basic::options::OptionKeys::loops::vall_file
IntegerVectorOptionKey const	basic::options::OptionKeys::loops::frag_sizes
FileVectorOptionKey const	basic::options::OptionKeys::loops::frag_files
FileOptionKey const	basic::options::OptionKeys::loops::output_pdb
BooleanOptionKey const	basic::options::OptionKeys::loops::debug
BooleanOptionKey const	basic::options::OptionKeys::loops::build_initial
BooleanOptionKey const	basic::options::OptionKeys::loops::extended
BooleanOptionKey const	basic::options::OptionKeys::loops::remove_extended_loops
BooleanOptionKey const	basic::options::OptionKeys::loops::idealize_after_loop_close
BooleanOptionKey const	basic::options::OptionKeys::loops::idealize_before_loop_close
IntegerOptionKey const	basic::options::OptionKeys::loops::select_best_loop_from
IntegerOptionKey const	basic::options::OptionKeys::loops::build_attempts
IntegerOptionKey const	basic::options::OptionKeys::loops::grow_attempts
RealOptionKey const	basic::options::OptionKeys::loops::random_grow_loops_by
BooleanOptionKey const	basic::options::OptionKeys::loops::accept_aborted_loops
BooleanOptionKey const	basic::options::OptionKeys::loops::strict_loops
BooleanOptionKey const	basic::options::OptionKeys::loops::superimpose_native
IntegerVectorOptionKey const	basic::options::OptionKeys::loops::build_specific_loops
BooleanOptionKey const	basic::options::OptionKeys::loops::random_order
BooleanOptionKey const	basic::options::OptionKeys::loops::build_all_loops
BooleanOptionKey const	basic::options::OptionKeys::loops::fa_closure_protocol
RealOptionKey const	basic::options::OptionKeys::loops::combine_rate
BooleanOptionKey const	basic::options::OptionKeys::loops::skip_initial_loop_build
StringOptionKey const	basic::options::OptionKeys::loops::remodel
StringOptionKey const	basic::options::OptionKeys::loops::intermedrelax
StringOptionKey const	basic::options::OptionKeys::loops::refine
StringOptionKey const	basic::options::OptionKeys::loops::relax
BooleanOptionKey const	basic::options::OptionKeys::loops::final_clean_fastrelax
BooleanOptionKey const	basic::options::OptionKeys::loops::relax_with_foldtree
RealOptionKey const	basic::options::OptionKeys::loops::constrain_rigid_segments
StringOptionKey const	basic::options::OptionKeys::loops::loopscores
BooleanOptionKey const	basic::options::OptionKeys::loops::timer
BooleanOptionKey const	basic::options::OptionKeys::loops::vicinity_sampling
RealOptionKey const	basic::options::OptionKeys::loops::vicinity_degree
RealOptionKey const	basic::options::OptionKeys::loops::neighbor_dist
IntegerOptionKey const	basic::options::OptionKeys::loops::kic_max_seglen
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_recover_last
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_min_after_repack
BooleanOptionKey const	basic::options::OptionKeys::loops::optimize_only_kic_region_sidechains_after_move
IntegerOptionKey const	basic::options::OptionKeys::loops::max_kic_build_attempts
IntegerOptionKey const	basic::options::OptionKeys::loops::remodel_kic_attempts
IntegerOptionKey const	basic::options::OptionKeys::loops::max_kic_perturber_samples
BooleanOptionKey const	basic::options::OptionKeys::loops::nonpivot_torsion_sampling
BooleanOptionKey const	basic::options::OptionKeys::loops::fix_ca_bond_angles
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_use_linear_chainbreak
BooleanOptionKey const	basic::options::OptionKeys::loops::sample_omega_at_pre_prolines
BooleanOptionKey const	basic::options::OptionKeys::loops::allow_omega_move
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_with_cartmin
BooleanOptionKey const	basic::options::OptionKeys::loops::allow_takeoff_torsion_move
IntegerOptionKey const	basic::options::OptionKeys::loops::extend_length
IntegerOptionKey const	basic::options::OptionKeys::loops::perturb_outer_cycles
IntegerOptionKey const	basic::options::OptionKeys::loops::refine_outer_cycles
IntegerOptionKey const	basic::options::OptionKeys::loops::max_inner_cycles
IntegerOptionKey const	basic::options::OptionKeys::loops::repack_period
RealOptionKey const	basic::options::OptionKeys::loops::remodel_init_temp
RealOptionKey const	basic::options::OptionKeys::loops::remodel_final_temp
RealOptionKey const	basic::options::OptionKeys::loops::refine_init_temp
RealOptionKey const	basic::options::OptionKeys::loops::refine_final_temp
IntegerOptionKey const	basic::options::OptionKeys::loops::gapspan
IntegerOptionKey const	basic::options::OptionKeys::loops::spread
IntegerOptionKey const	basic::options::OptionKeys::loops::kinematic_wrapper_cycles
IntegerOptionKey const	basic::options::OptionKeys::loops::kic_num_rotamer_trials
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_omega_sampling
RealOptionKey const	basic::options::OptionKeys::loops::kic_bump_overlap_factor
IntegerOptionKey const	basic::options::OptionKeys::loops::minimize_max_iter
StringOptionKey const	basic::options::OptionKeys::loops::restrict_kic_sampling_to_torsion_string
BooleanOptionKey const	basic::options::OptionKeys::loops::derive_torsion_string_from_native_pose
BooleanOptionKey const	basic::options::OptionKeys::loops::always_remodel_full_loop
BooleanOptionKey const	basic::options::OptionKeys::loops::taboo_sampling
BooleanOptionKey const	basic::options::OptionKeys::loops::taboo_in_fa
BooleanOptionKey const	basic::options::OptionKeys::loops::ramp_fa_rep
BooleanOptionKey const	basic::options::OptionKeys::loops::ramp_rama
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_rama2b
BooleanOptionKey const	basic::options::OptionKeys::loops::kic_leave_centroid_after_initial_closure
BooleanOptionKey const	basic::options::OptionKeys::loops::legacy_kic
BooleanOptionKey const	basic::options::OptionKeys::loops::alternative_closure_protocol
RealOptionKey const	basic::options::OptionKeys::loops::chainbreak_max_accept
BooleanOptionKey const	basic::options::OptionKeys::loops::debug_loop_closure
BooleanOptionKey const	basic::options::OptionKeys::loops::non_ideal_loop_closing
RealOptionKey const	basic::options::OptionKeys::loops::scored_frag_cycles
RealOptionKey const	basic::options::OptionKeys::loops::short_frag_cycles
RealOptionKey const	basic::options::OptionKeys::loops::rmsd_tol
RealOptionKey const	basic::options::OptionKeys::loops::chain_break_tol
BooleanOptionKey const	basic::options::OptionKeys::loops::random_loop
FileVectorOptionKey const	basic::options::OptionKeys::loops::stealfrags
IntegerOptionKey const	basic::options::OptionKeys::loops::stealfrags_times
RealOptionKey const	basic::options::OptionKeys::loops::coord_cst
RealOptionKey const	basic::options::OptionKeys::loops::skip_1mers
RealOptionKey const	basic::options::OptionKeys::loops::skip_3mers
RealOptionKey const	basic::options::OptionKeys::loops::skip_9mers
BooleanOptionKey const	basic::options::OptionKeys::loops::loop_model
RealOptionKey const	basic::options::OptionKeys::loops::score_filter_cutoff
BooleanOptionKey const	basic::options::OptionKeys::loops::ccd_closure
BooleanOptionKey const	basic::options::OptionKeys::loops::skip_ccd_moves
BooleanOptionKey const	basic::options::OptionKeys::loops::no_randomize_loop
BooleanOptionKey const	basic::options::OptionKeys::loops::loops_subset
IntegerOptionKey const	basic::options::OptionKeys::loops::num_desired_loops
RealOptionKey const	basic::options::OptionKeys::loops::loop_combine_rate
RealOptionKey const	basic::options::OptionKeys::loops::final_score_filter
BooleanOptionKey const	basic::options::OptionKeys::loops::no_combine_if_fail
BooleanOptionKey const	basic::options::OptionKeys::loops::shorten_long_terminal_loop
IntegerOptionKey const	basic::options::OptionKeys::loops::backrub_trials
RealOptionKey const	basic::options::OptionKeys::loops::looprlx_cycle_ratio
RealOptionKey const	basic::options::OptionKeys::loops::extended_beta
BooleanOptionKey const	basic::options::OptionKeys::loops::no_looprebuild
BooleanOptionKey const	basic::options::OptionKeys::loops::allow_lig_move
FileOptionKey const	basic::options::OptionKeys::loops::keep_natro
IntegerOptionKey const	basic::options::OptionKeys::loops::refine_design_iterations
BooleanOptionKey const	basic::options::OptionKeys::loops::ccd::ccd
RealOptionKey const	basic::options::OptionKeys::loops::ccd::max_rama_score_increase
RealVectorOptionKey const	basic::options::OptionKeys::loops::ccd::max_torsion_delta_per_move
RealVectorOptionKey const	basic::options::OptionKeys::loops::ccd::max_torsion_delta
RealOptionKey const	basic::options::OptionKeys::loops::ccd::tolerance
IntegerOptionKey const	basic::options::OptionKeys::loops::ccd::max_cycles
BooleanOptionKey const	basic::options::OptionKeys::loops::ccd::check_rama_scores
BooleanOptionKey const	basic::options::OptionKeys::loops::ccd::rama_2b
RealOptionKey const	basic::options::OptionKeys::loops::ccd::temperature

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)