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Rosetta
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Functions | |
| RealOptionKey const | carbohydrates::glycan_dock::stage1_perturb_glycan_com_trans_mag ("carbohydrates:glycan_dock:stage1_perturb_glycan_com_trans_mag") |
| RealOptionKey const | carbohydrates::glycan_dock::stage1_perturb_glycan_com_rot_mag ("carbohydrates:glycan_dock:stage1_perturb_glycan_com_rot_mag") |
| RealOptionKey const | carbohydrates::glycan_dock::stage1_torsion_uniform_pert_mag ("carbohydrates:glycan_dock:stage1_torsion_uniform_pert_mag") |
| RealOptionKey const | carbohydrates::glycan_dock::mc_kt ("carbohydrates:glycan_dock:mc_kt") |
| IntegerOptionKey const | carbohydrates::glycan_dock::n_rigid_body_rounds ("carbohydrates:glycan_dock:n_rigid_body_rounds") |
| BooleanOptionKey const | carbohydrates::glycan_dock::slide_glycan_into_contact ("carbohydrates:glycan_dock:slide_glycan_into_contact") |
| RealOptionKey const | carbohydrates::glycan_dock::stage2_trans_mag ("carbohydrates:glycan_dock:stage2_trans_mag") |
| RealOptionKey const | carbohydrates::glycan_dock::stage2_rot_mag ("carbohydrates:glycan_dock:stage2_rot_mag") |
| IntegerOptionKey const | carbohydrates::glycan_dock::n_torsion_rounds ("carbohydrates:glycan_dock:n_torsion_rounds") |
| IntegerOptionKey const | carbohydrates::glycan_dock::full_packing_frequency ("carbohydrates:glycan_dock:full_packing_frequency") |
| RealOptionKey const | carbohydrates::glycan_dock::interface_packing_distance ("carbohydrates:glycan_dock:interface_packing_distance") |
| BooleanOptionKey const | carbohydrates::glycan_dock::ramp_scorefxn ("carbohydrates:glycan_dock:ramp_scorefxn") |
| BooleanOptionKey const | carbohydrates::glycan_dock::watch_in_pymol ("carbohydrates:glycan_dock:watch_in_pymol") |
| BooleanOptionKey const | carbohydrates::clash_check::clash_check ("carbohydrates:clash_check") |
| StringVectorOptionKey const | carbohydrates::clash_check::glycan_branches ("carbohydrates:clash_check:glycan_branches") |
| StringVectorOptionKey const | carbohydrates::clash_check::check_chains ("carbohydrates:clash_check:check_chains") |
| RealOptionKey const | carbohydrates::clash_check::soft_clash ("carbohydrates:clash_check:soft_clash") |
| RealOptionKey const | carbohydrates::clash_check::cb_clash_distance ("carbohydrates:clash_check:cb_clash_distance") |
| BooleanOptionKey const | carbohydrates::clash_check::ignore_hydrogens ("carbohydrates:clash_check:ignore_hydrogens") |
| BooleanOptionKey const | carbohydrates::clash_check::ignore_full_res_output ("carbohydrates:clash_check:ignore_full_res_output") |
| BooleanOptionKey const | carbohydrates::clash_check::output_per_glycan_data ("carbohydrates:clash_check:output_per_glycan_data") |
| BooleanOptionKey const | rings::rings ("rings") |
| FileOptionKey const | rings::ring_conformer_dbpath ("rings:ring_conformer_dbpath") |
| BooleanOptionKey const | rings::lock_rings ("rings:lock_rings") |
| BooleanOptionKey const | rings::idealize_rings ("rings:idealize_rings") |
| BooleanOptionKey const | rings::sample_high_energy_conformers ("rings:sample_high_energy_conformers") |
| BooleanOptionKey const | chemical::chemical ("chemical") |
| StringVectorOptionKey const | chemical::exclude_patches ("chemical:exclude_patches") |
| StringVectorOptionKey const | chemical::include_patches ("chemical:include_patches") |
| StringVectorOptionKey const | chemical::add_atom_type_set_parameters ("chemical:add_atom_type_set_parameters") |
| StringVectorOptionKey const | chemical::add_atom_types ("chemical:add_atom_types") |
| StringVectorOptionKey const | chemical::add_mm_atom_type_set_parameters ("chemical:add_mm_atom_type_set_parameters") |
| StringVectorOptionKey const | chemical::set_atom_properties ("chemical:set_atom_properties") |
| StringVectorOptionKey const | chemical::patch_selectors ("chemical:patch_selectors") |
| BooleanOptionKey const | chemical::override_rsd_type_limit ("chemical:override_rsd_type_limit") |
| StringVectorOptionKey const | chemical::clone_atom_types ("chemical:clone_atom_types") |
| StringVectorOptionKey const | chemical::reassign_atom_types ("chemical:reassign_atom_types") |
| StringVectorOptionKey const | chemical::reassign_icoor ("chemical:reassign_icoor") |
| StringVectorOptionKey const | chemical::set_atomic_charge ("chemical:set_atomic_charge") |
| StringVectorOptionKey const | chemical::set_patch_atomic_charge ("chemical:set_patch_atomic_charge") |
| BooleanOptionKey const | chemical::enlarge_H_lj ("chemical:enlarge_H_lj") |
| BooleanOptionKey const | chemical::no_hbonds_to_ether_oxygens ("chemical:no_hbonds_to_ether_oxygens") |
| BooleanOptionKey const | chemical::unset_acceptor_ether_oxygens ("chemical:unset_acceptor_ether_oxygens") |
| BooleanOptionKey const | constraints::constraints ("constraints") |
| BooleanOptionKey const | constraints::exit_on_bad_read ("constraints:exit_on_bad_read") |
| StringVectorOptionKey const | constraints::cst_file ("constraints:cst_file") |
| RealOptionKey const | constraints::cst_weight ("constraints:cst_weight") |
| RealOptionKey const | constraints::max_cst_dist ("constraints:max_cst_dist") |
| StringVectorOptionKey const | constraints::cst_fa_file ("constraints:cst_fa_file") |
| RealOptionKey const | constraints::cst_fa_weight ("constraints:cst_fa_weight") |
| BooleanOptionKey const | constraints::normalize_mixture_func ("constraints:normalize_mixture_func") |
| BooleanOptionKey const | constraints::penalize_mixture_func ("constraints:penalize_mixture_func") |
| FileOptionKey const | constraints::forest_file ("constraints:forest_file") |
| BooleanOptionKey const | constraints::compute_total_dist_cst ("constraints:compute_total_dist_cst") |
| IntegerOptionKey const | constraints::cull_with_native ("constraints:cull_with_native") |
| FileOptionKey const | constraints::dump_cst_set ("constraints:dump_cst_set") |
| IntegerVectorOptionKey const | constraints::evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep") |
| BooleanOptionKey const | constraints::named ("constraints:named") |
| BooleanOptionKey const | constraints::no_cst_in_relax ("constraints:no_cst_in_relax") |
| BooleanOptionKey const | constraints::no_linearize_bounded ("constraints:no_linearize_bounded") |
| RealOptionKey const | constraints::pocket_constraint_weight ("constraints:pocket_constraint_weight") |
| BooleanOptionKey const | constraints::pocket_zero_derivatives ("constraints:pocket_zero_derivatives") |
| BooleanOptionKey const | constraints::viol ("constraints:viol") |
| IntegerOptionKey const | constraints::viol_level ("constraints:viol_level") |
| StringOptionKey const | constraints::viol_type ("constraints:viol_type") |
| RealOptionKey const | constraints::sog_cst_param ("constraints:sog_cst_param") |
| RealOptionKey const | constraints::sog_upper_bound ("constraints:sog_upper_bound") |
| BooleanOptionKey const | constraints::epr_distance ("constraints:epr_distance") |
| IntegerOptionKey const | constraints::combine ("constraints:combine") |
| FileOptionKey const | constraints::combine_exclude_region ("constraints:combine_exclude_region") |
| BooleanOptionKey const | constraints::skip_redundant ("constraints:skip_redundant") |
| IntegerOptionKey const | constraints::skip_redundant_width ("constraints:skip_redundant_width") |
| BooleanVectorOptionKey const | constraints::force_pdb_info_mapping ("constraints:force_pdb_info_mapping") |
| BooleanOptionKey const | corrections::corrections ("corrections") |
| BooleanOptionKey const | corrections::beta ("corrections:beta") |
| BooleanOptionKey const | corrections::beta_cart ("corrections:beta_cart") |
| BooleanOptionKey const | corrections::beta_nov16 ("corrections:beta_nov16") |
| BooleanOptionKey const | corrections::beta_nov16_cart ("corrections:beta_nov16_cart") |
| BooleanOptionKey const | corrections::beta_july15 ("corrections:beta_july15") |
| BooleanOptionKey const | corrections::beta_july15_cart ("corrections:beta_july15_cart") |
| BooleanOptionKey const | corrections::gen_potential ("corrections:gen_potential") |
| BooleanOptionKey const | corrections::newdna ("corrections:newdna") |
| BooleanOptionKey const | corrections::restore_talaris_behavior ("corrections:restore_talaris_behavior") |
| BooleanOptionKey const | corrections::correct ("corrections:correct") |
| BooleanOptionKey const | corrections::hbond_sp2_correction ("corrections:hbond_sp2_correction") |
| BooleanOptionKey const | corrections::facts_default ("corrections:facts_default") |
| BooleanOptionKey const | corrections::score::score ("corrections:score") |
| BooleanOptionKey const | corrections::score::bbdep_omega ("corrections:score:bbdep_omega") |
| BooleanOptionKey const | corrections::score::bbdep_bond_params ("corrections:score:bbdep_bond_params") |
| BooleanOptionKey const | corrections::score::bbdep_bond_devs ("corrections:score:bbdep_bond_devs") |
| BooleanOptionKey const | corrections::score::fa_dun_canonicals_use_voronoi ("corrections:score:fa_dun_canonicals_use_voronoi") |
| BooleanOptionKey const | corrections::score::fa_dun_noncanonicals_use_voronoi ("corrections:score:fa_dun_noncanonicals_use_voronoi") |
| BooleanOptionKey const | corrections::score::fa_dun_correct_rotamer_well_order ("corrections:score:fa_dun_correct_rotamer_well_order") |
| BooleanOptionKey const | corrections::score::fa_dun_correct_achiral_peptoid_libraries ("corrections:score:fa_dun_correct_achiral_peptoid_libraries") |
| BooleanOptionKey const | corrections::score::no_his_his_pairE ("corrections:score:no_his_his_pairE") |
| BooleanOptionKey const | corrections::score::no_his_DE_pairE ("corrections:score:no_his_DE_pairE") |
| StringOptionKey const | corrections::score::p_aa_pp ("corrections:score:p_aa_pp") |
| BooleanOptionKey const | corrections::score::p_aa_pp_nogridshift ("corrections:score:p_aa_pp_nogridshift") |
| BooleanOptionKey const | corrections::score::rama_not_squared ("corrections:score:rama_not_squared") |
| FileOptionKey const | corrections::score::rama_map ("corrections:score:rama_map") |
| FileOptionKey const | corrections::score::rama_pp_map ("corrections:score:rama_pp_map") |
| FileOptionKey const | corrections::score::rama_map_average_L_flat ("corrections:score:rama_map_average_L_flat") |
| FileOptionKey const | corrections::score::rama_map_sym_average_L_flat ("corrections:score:rama_map_sym_average_L_flat") |
| FileOptionKey const | corrections::score::rama_map_sym_gly_flat ("corrections:score:rama_map_sym_gly_flat") |
| FileOptionKey const | corrections::score::rama_map_sym_pro_flat ("corrections:score:rama_map_sym_pro_flat") |
| FileOptionKey const | corrections::score::rama_map_average_L_flat_stringent ("corrections:score:rama_map_average_L_flat_stringent") |
| FileOptionKey const | corrections::score::rama_map_sym_average_L_flat_stringent ("corrections:score:rama_map_sym_average_L_flat_stringent") |
| FileOptionKey const | corrections::score::rama_map_sym_gly_flat_stringent ("corrections:score:rama_map_sym_gly_flat_stringent") |
| FileOptionKey const | corrections::score::rama_map_sym_pro_flat_stringent ("corrections:score:rama_map_sym_pro_flat_stringent") |
| BooleanOptionKey const | corrections::score::rama_prepro_steep ("corrections:score:rama_prepro_steep") |
| BooleanOptionKey const | corrections::score::rama_prepro_nobidentate ("corrections:score:rama_prepro_nobidentate") |
| BooleanOptionKey const | corrections::score::cenrot ("corrections:score:cenrot") |
| BooleanOptionKey const | corrections::score::dun10 ("corrections:score:dun10") |
| StringOptionKey const | corrections::score::dun10_dir ("corrections:score:dun10_dir") |
| StringOptionKey const | corrections::score::dun02_file ("corrections:score:dun02_file") |
| StringOptionKey const | corrections::score::ch_o_bond_potential ("corrections:score:ch_o_bond_potential") |
| RealOptionKey const | corrections::score::lj_hbond_hdis ("corrections:score:lj_hbond_hdis") |
| RealOptionKey const | corrections::score::lj_hbond_OH_donor_dis ("corrections:score:lj_hbond_OH_donor_dis") |
| BooleanOptionKey const | corrections::score::score12prime ("corrections:score:score12prime") |
| RealOptionKey const | corrections::score::hbond_energy_shift ("corrections:score:hbond_energy_shift") |
| RealOptionKey const | corrections::score::hb_sp2_BAH180_rise ("corrections:score:hb_sp2_BAH180_rise") |
| RealOptionKey const | corrections::score::hb_sp2_outer_width ("corrections:score:hb_sp2_outer_width") |
| BooleanOptionKey const | corrections::score::hb_sp2_chipen ("corrections:score:hb_sp2_chipen") |
| BooleanOptionKey const | corrections::score::hbond_measure_sp3acc_BAH_from_hvy ("corrections:score:hbond_measure_sp3acc_BAH_from_hvy") |
| BooleanOptionKey const | corrections::score::hb_fade_energy ("corrections:score:hb_fade_energy") |
| BooleanOptionKey const | corrections::score::hb_exclude_ether_oxygens ("corrections:score:hb_exclude_ether_oxygens") |
| BooleanOptionKey const | corrections::score::hb_cen_soft ("corrections:score:hb_cen_soft") |
| BooleanOptionKey const | corrections::score::use_bicubic_interpolation ("corrections:score:use_bicubic_interpolation") |
| BooleanOptionKey const | corrections::score::dun_normsd ("corrections:score:dun_normsd") |
| BooleanOptionKey const | corrections::score::dun_entropy_correction ("corrections:score:dun_entropy_correction") |
| BooleanOptionKey const | corrections::score::no_autogen_cart_improper ("corrections:score:no_autogen_cart_improper") |
| RealOptionKey const | corrections::score::gridscore_outbox_penalty_weight ("corrections:score:gridscore_outbox_penalty_weight") |
| BooleanOptionKey const | corrections::chemical::chemical ("corrections:chemical") |
| BooleanOptionKey const | corrections::chemical::icoor_05_2009 ("corrections:chemical:icoor_05_2009") |
| BooleanOptionKey const | corrections::chemical::parse_charge ("corrections:chemical:parse_charge") |
| BooleanOptionKey const | corrections::chemical::expand_st_chi2sampling ("corrections:chemical:expand_st_chi2sampling") |
| StringOptionKey const | corrections::chemical::alternate_fullatom_ats ("corrections:chemical:alternate_fullatom_ats") |
| BooleanOptionKey const | corrections::genpotential::genpotential ("corrections:genpotential") |
| BooleanOptionKey const | corrections::genpotential::quick_lookup ("corrections:genpotential:quick_lookup") |
| StringVectorOptionKey const | corrections::genpotential::set_torsion_params ("corrections:genpotential:set_torsion_params") |
| StringVectorOptionKey const | corrections::genpotential::set_special_torsion_params ("corrections:genpotential:set_special_torsion_params") |
| BooleanOptionKey const | corrections::shapovalov_lib_fixes_enable ("corrections:shapovalov_lib_fixes_enable") |
| BooleanOptionKey const | corrections::shapovalov_lib::shapovalov_lib ("corrections:shapovalov_lib") |
| BooleanOptionKey const | corrections::shapovalov_lib::shap_dun10_enable ("corrections:shapovalov_lib:shap_dun10_enable") |
| StringOptionKey const | corrections::shapovalov_lib::shap_dun10_smooth_level ("corrections:shapovalov_lib:shap_dun10_smooth_level") |
| StringOptionKey const | corrections::shapovalov_lib::shap_dun10_dir ("corrections:shapovalov_lib:shap_dun10_dir") |
| BooleanOptionKey const | corrections::shapovalov_lib::shap_dun10_use_minus_log_P_ignore_P ("corrections:shapovalov_lib:shap_dun10_use_minus_log_P_ignore_P") |
| BooleanOptionKey const | corrections::shapovalov_lib::shap_rama_enable ("corrections:shapovalov_lib:shap_rama_enable") |
| StringOptionKey const | corrections::shapovalov_lib::shap_rama_smooth_level ("corrections:shapovalov_lib:shap_rama_smooth_level") |
| FileOptionKey const | corrections::shapovalov_lib::shap_rama_map ("corrections:shapovalov_lib:shap_rama_map") |
| BooleanOptionKey const | corrections::shapovalov_lib::shap_rama_nogridshift ("corrections:shapovalov_lib:shap_rama_nogridshift") |
| BooleanOptionKey const | corrections::shapovalov_lib::shap_p_aa_pp_enable ("corrections:shapovalov_lib:shap_p_aa_pp_enable") |
| StringOptionKey const | corrections::shapovalov_lib::shap_p_aa_pp_smooth_level ("corrections:shapovalov_lib:shap_p_aa_pp_smooth_level") |
| StringOptionKey const | corrections::shapovalov_lib::shap_p_aa_pp ("corrections:shapovalov_lib:shap_p_aa_pp") |
| BooleanOptionKey const | corrections::water::water ("corrections:water") |
| BooleanOptionKey const | corrections::water::water_bump_check ("corrections:water:water_bump_check") |
| RealOptionKey const | corrections::water::lkb_overlap_distance ("corrections:water:lkb_overlap_distance") |
| RealOptionKey const | corrections::water::lkb_cluster_radius ("corrections:water:lkb_cluster_radius") |
| RealOptionKey const | corrections::water::lkb_rotset_radius ("corrections:water:lkb_rotset_radius") |
| StringOptionKey const | corrections::water::wat_rot_params ("corrections:water:wat_rot_params") |
| RealOptionKey const | corrections::water::dwell_cutoff ("corrections:water:dwell_cutoff") |
| RealOptionKey const | corrections::water::cluster_radius ("corrections:water:cluster_radius") |
| RealOptionKey const | corrections::water::cluster_cutoff ("corrections:water:cluster_cutoff") |
| RealOptionKey const | corrections::water::watlim_scale ("corrections:water:watlim_scale") |
| StringOptionKey const | corrections::water::pointwater_params ("corrections:water:pointwater_params") |
| RealOptionKey const | corrections::water::ordered_pt_wat_penalty ("corrections:water:ordered_pt_wat_penalty") |
| RealOptionKey const | corrections::water::pointwat_wat_bonus ("corrections:water:pointwat_wat_bonus") |
| RealOptionKey const | corrections::water::pointwat_wat_bonus_width ("corrections:water:pointwat_wat_bonus_width") |
| RealOptionKey const | corrections::water::ordered_wat_penalty ("corrections:water:ordered_wat_penalty") |
| RealOptionKey const | corrections::water::wat_rot_sampling ("corrections:water:wat_rot_sampling") |
| BooleanOptionKey const | corrections::water::wat_axis_sampling ("corrections:water:wat_axis_sampling") |
| RealOptionKey const | corrections::water::axis_rot_sampling ("corrections:water:axis_rot_sampling") |
| BooleanOptionKey const | corrections::water::include_vrt ("corrections:water:include_vrt") |
| BooleanOptionKey const | enzymes::enzymes ("enzymes") |
| StringOptionKey const | enzymes::species ("enzymes:species") |
| StringOptionKey const | enzymes::enzyme ("enzymes:enzyme") |
| RealOptionKey const | enzymes::efficiency ("enzymes:efficiency") |
| BooleanOptionKey const | evaluation::evaluation ("evaluation") |
| FileVectorOptionKey const | evaluation::rmsd_target ("evaluation:rmsd_target") |
| StringVectorOptionKey const | evaluation::rmsd_column ("evaluation:rmsd_column") |
| FileVectorOptionKey const | evaluation::rmsd_select ("evaluation:rmsd_select") |
| FileVectorOptionKey const | evaluation::align_rmsd_target ("evaluation:align_rmsd_target") |
| FileVectorOptionKey const | evaluation::structural_similarity ("evaluation:structural_similarity") |
| BooleanOptionKey const | evaluation::contact_map ("evaluation:contact_map") |
| StringVectorOptionKey const | evaluation::jscore_evaluator ("evaluation:jscore_evaluator") |
| StringVectorOptionKey const | evaluation::align_rmsd_column ("evaluation:align_rmsd_column") |
| FileVectorOptionKey const | evaluation::align_rmsd_fns ("evaluation:align_rmsd_fns") |
| StringOptionKey const | evaluation::align_rmsd_format ("evaluation:align_rmsd_format") |
| StringOptionKey const | evaluation::rms_type ("evaluation:rms_type") |
| StringOptionKey const | evaluation::predicted_burial_fn ("evaluation:predicted_burial_fn") |
| FileOptionKey const | evaluation::pool ("evaluation:pool") |
| FileVectorOptionKey const | evaluation::rmsd ("evaluation:rmsd") |
| FileVectorOptionKey const | evaluation::chirmsd ("evaluation:chirmsd") |
| BooleanOptionKey const | evaluation::gdtmm ("evaluation:gdtmm") |
| BooleanOptionKey const | evaluation::gdttm ("evaluation:gdttm") |
| BooleanOptionKey const | evaluation::score_with_rmsd ("evaluation:score_with_rmsd") |
| FileVectorOptionKey const | evaluation::constraints ("evaluation:constraints") |
| FileVectorOptionKey const | evaluation::constraints_column ("evaluation:constraints_column") |
| FileVectorOptionKey const | evaluation::combined_constraints ("evaluation:combined_constraints") |
| FileVectorOptionKey const | evaluation::combined_constraints_column ("evaluation:combined_constraints_column") |
| IntegerOptionKey const | evaluation::combine_statistics ("evaluation:combine_statistics") |
| StringVectorOptionKey const | evaluation::chemical_shifts ("evaluation:chemical_shifts") |
| StringOptionKey const | evaluation::sparta_dir ("evaluation:sparta_dir") |
| StringVectorOptionKey const | evaluation::cam_shifts ("evaluation:cam_shifts") |
| StringVectorOptionKey const | evaluation::pales ("evaluation:pales") |
| FileVectorOptionKey const | evaluation::extra_score ("evaluation:extra_score") |
| FileVectorOptionKey const | evaluation::extra_score_patch ("evaluation:extra_score_patch") |
| StringVectorOptionKey const | evaluation::extra_score_column ("evaluation:extra_score_column") |
| FileVectorOptionKey const | evaluation::extra_score_select ("evaluation:extra_score_select") |
| FileVectorOptionKey const | evaluation::rdc_target ("evaluation:rdc_target") |
| BooleanOptionKey const | evaluation::symmetric_rmsd ("evaluation:symmetric_rmsd") |
| StringVectorOptionKey const | evaluation::rdc_column ("evaluation:rdc_column") |
| StringVectorOptionKey const | evaluation::rdc ("evaluation:rdc") |
| StringOptionKey const | evaluation::built_in_rdc ("evaluation:built_in_rdc") |
| BooleanOptionKey const | evaluation::jump_nr ("evaluation:jump_nr") |
| IntegerVectorOptionKey const | evaluation::score_exclude_res ("evaluation:score_exclude_res") |
| IntegerOptionKey const | evaluation::score_sscore_short_helix ("evaluation:score_sscore_short_helix") |
| IntegerOptionKey const | evaluation::score_sscore_maxloop ("evaluation:score_sscore_maxloop") |
| IntegerOptionKey const | evaluation::window_size ("evaluation:window_size") |
| StringOptionKey const | evaluation::I_sc ("evaluation:I_sc") |
| BooleanOptionKey const | evaluation::Irms ("evaluation:Irms") |
| BooleanOptionKey const | evaluation::Ca_Irms ("evaluation:Ca_Irms") |
| BooleanOptionKey const | evaluation::Fnat ("evaluation:Fnat") |
| BooleanOptionKey const | evaluation::Lrmsd ("evaluation:Lrmsd") |
| BooleanOptionKey const | evaluation::Fnonnat ("evaluation:Fnonnat") |
| BooleanOptionKey const | evaluation::DockMetrics ("evaluation:DockMetrics") |
| BooleanOptionKey const | filters::filters ("filters") |
| BooleanOptionKey const | filters::disable_all_filters ("filters:disable_all_filters") |
| BooleanOptionKey const | filters::disable_rg_filter ("filters:disable_rg_filter") |
| BooleanOptionKey const | filters::disable_co_filter ("filters:disable_co_filter") |
| BooleanOptionKey const | filters::disable_sheet_filter ("filters:disable_sheet_filter") |
| RealOptionKey const | filters::set_pddf_filter ("filters:set_pddf_filter") |
| RealOptionKey const | filters::set_saxs_filter ("filters:set_saxs_filter") |
| BooleanOptionKey const | gpu::gpu ("gpu") |
| IntegerOptionKey const | gpu::device ("gpu:device") |
| IntegerOptionKey const | gpu::threads ("gpu:threads") |
| BooleanOptionKey const | jumps::jumps ("jumps") |
| BooleanOptionKey const | jumps::evaluate ("jumps:evaluate") |
| FileOptionKey const | jumps::extra_frags_for_ss ("jumps:extra_frags_for_ss") |
| BooleanOptionKey const | jumps::fix_chainbreak ("jumps:fix_chainbreak") |
| FileOptionKey const | jumps::fix_jumps ("jumps:fix_jumps") |
| FileOptionKey const | jumps::jump_lib ("jumps:jump_lib") |
| FileOptionKey const | jumps::loop_definition_from_file ("jumps:loop_definition_from_file") |
| BooleanOptionKey const | jumps::no_chainbreak_in_relax ("jumps:no_chainbreak_in_relax") |
| FileOptionKey const | jumps::pairing_file ("jumps:pairing_file") |
| IntegerVectorOptionKey const | jumps::random_sheets ("jumps:random_sheets") |
| FileOptionKey const | jumps::residue_pair_jump_file ("jumps:residue_pair_jump_file") |
| IntegerVectorOptionKey const | jumps::sheets ("jumps:sheets") |
| FileOptionKey const | jumps::topology_file ("jumps:topology_file") |
| BooleanOptionKey const | jumps::bb_moves ("jumps:bb_moves") |
| BooleanOptionKey const | jumps::no_wobble ("jumps:no_wobble") |
| BooleanOptionKey const | jumps::no_shear ("jumps:no_shear") |
| BooleanOptionKey const | jumps::no_sample_ss_jumps ("jumps:no_sample_ss_jumps") |
| IntegerOptionKey const | jumps::invrate_jump_move ("jumps:invrate_jump_move") |
| RealOptionKey const | jumps::chainbreak_weight_stage1 ("jumps:chainbreak_weight_stage1") |
| RealOptionKey const | jumps::chainbreak_weight_stage2 ("jumps:chainbreak_weight_stage2") |
| RealOptionKey const | jumps::chainbreak_weight_stage3 ("jumps:chainbreak_weight_stage3") |
| RealOptionKey const | jumps::chainbreak_weight_stage4 ("jumps:chainbreak_weight_stage4") |
| BooleanOptionKey const | jumps::ramp_chainbreaks ("jumps:ramp_chainbreaks") |
| RealOptionKey const | jumps::increase_chainbreak ("jumps:increase_chainbreak") |
| BooleanOptionKey const | jumps::overlap_chainbreak ("jumps:overlap_chainbreak") |
| RealOptionKey const | jumps::sep_switch_accelerate ("jumps:sep_switch_accelerate") |
| BooleanOptionKey const | jumps::dump_frags ("jumps:dump_frags") |
| IntegerOptionKey const | jumps::njumps ("jumps:njumps") |
| IntegerOptionKey const | jumps::max_strand_gap_allowed ("jumps:max_strand_gap_allowed") |
| RealOptionKey const | jumps::contact_score ("jumps:contact_score") |
| BooleanOptionKey const | jumps::filter_templates ("jumps:filter_templates") |
| BooleanOptionKey const | loops::loops ("loops") |
| StringOptionKey const | loops::cen_weights ("loops:cen_weights") |
| StringOptionKey const | loops::cen_patch ("loops:cen_patch") |
| FileOptionKey const | loops::input_pdb ("loops:input_pdb") |
| StringVectorOptionKey const | loops::loop_file ("loops:loop_file") |
| FileOptionKey const | loops::extended_loop_file ("loops:extended_loop_file") |
| FileOptionKey const | loops::mm_loop_file ("loops:mm_loop_file") |
| BooleanOptionKey const | loops::fix_natsc ("loops:fix_natsc") |
| BooleanOptionKey const | loops::refine_only ("loops:refine_only") |
| BooleanOptionKey const | loops::fast ("loops:fast") |
| FileOptionKey const | loops::vall_file ("loops:vall_file") |
| IntegerVectorOptionKey const | loops::frag_sizes ("loops:frag_sizes") |
| FileVectorOptionKey const | loops::frag_files ("loops:frag_files") |
| FileOptionKey const | loops::output_pdb ("loops:output_pdb") |
| BooleanOptionKey const | loops::debug ("loops:debug") |
| BooleanOptionKey const | loops::build_initial ("loops:build_initial") |
| BooleanOptionKey const | loops::extended ("loops:extended") |
| BooleanOptionKey const | loops::remove_extended_loops ("loops:remove_extended_loops") |
| BooleanOptionKey const | loops::idealize_after_loop_close ("loops:idealize_after_loop_close") |
| BooleanOptionKey const | loops::idealize_before_loop_close ("loops:idealize_before_loop_close") |
| IntegerOptionKey const | loops::select_best_loop_from ("loops:select_best_loop_from") |
| IntegerOptionKey const | loops::build_attempts ("loops:build_attempts") |
| IntegerOptionKey const | loops::grow_attempts ("loops:grow_attempts") |
| RealOptionKey const | loops::random_grow_loops_by ("loops:random_grow_loops_by") |
| BooleanOptionKey const | loops::accept_aborted_loops ("loops:accept_aborted_loops") |
| BooleanOptionKey const | loops::strict_loops ("loops:strict_loops") |
1.9.1