| __init__(self, method, wt_struct) | mutant_modeler.MutantModeler | |
| __init__(self, method, wt_struct) | mutant_modeler.MutantModeler | |
| add_mutant(self, seq) | mutant_modeler.MutantModeler | |
| add_mutant(self, seq) | mutant_modeler.MutantModeler | |
| cmd_opts | mutant_modeler.MutantModeler | |
| compare_to_full_WT | mutant_modeler.MutantModeler | |
| figure_out_protein_pack_reps(self, index) | mutant_modeler.MutantModeler | |
| figure_out_protein_pack_reps(self, index) | mutant_modeler.MutantModeler | |
| get_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_high_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_high_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_low_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_low_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_med_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_med_res_command_lines(self, index) | mutant_modeler.MutantModeler | |
| get_mut_positions(self, seq) | mutant_modeler.MutantModeler | |
| get_mut_positions(self, seq) | mutant_modeler.MutantModeler | |
| high_res_WT_rebuild | mutant_modeler.MutantModeler | |
| make_high_res_subsets_and_cmd_lines(self, index, mut_subsets, mutant_seq_full, native_pdb, mut_depends) | mutant_modeler.MutantModeler | |
| make_high_res_subsets_and_cmd_lines(self, index, mut_subsets, mutant_seq_full, native_pdb, mut_depends) | mutant_modeler.MutantModeler | |
| map_RNA_index_to_full | mutant_modeler.MutantModeler | |
| med_res_WT_rebuild | mutant_modeler.MutantModeler | |
| method | mutant_modeler.MutantModeler | |
| mutant_index | mutant_modeler.MutantModeler | |
| mutant_seqs | mutant_modeler.MutantModeler | |
| mutant_subsets | mutant_modeler.MutantModeler | |
| protein_pack_reps | mutant_modeler.MutantModeler | |
| rosetta_prefix | mutant_modeler.MutantModeler | |
| run_local | mutant_modeler.MutantModeler | |
| set_cmd_opts(self, cmd_opts) | mutant_modeler.MutantModeler | |
| set_cmd_opts(self, cmd_opts) | mutant_modeler.MutantModeler | |
| set_protein_pack_reps(self, protein_pack_reps) | mutant_modeler.MutantModeler | |
| set_protein_pack_reps(self, protein_pack_reps) | mutant_modeler.MutantModeler | |
| set_rosetta_prefix(self, prefix) | mutant_modeler.MutantModeler | |
| set_rosetta_prefix(self, prefix) | mutant_modeler.MutantModeler | |
| set_run_locally(self, value) | mutant_modeler.MutantModeler | |
| set_run_locally(self, value) | mutant_modeler.MutantModeler | |
| set_sfxn(self, sfxn) | mutant_modeler.MutantModeler | |
| set_sfxn(self, sfxn) | mutant_modeler.MutantModeler | |
| set_wt_RNA_secstruct(self, secstruct) | mutant_modeler.MutantModeler | |
| set_wt_RNA_secstruct(self, secstruct) | mutant_modeler.MutantModeler | |
| sfxn | mutant_modeler.MutantModeler | |
| write_mutfile(self, mut_indices, mutant_seq, input_file, mfil_name) | mutant_modeler.MutantModeler | |
| write_mutfile(self, mut_indices, mutant_seq, input_file, mfil_name) | mutant_modeler.MutantModeler | |
| wt_base_pairs | mutant_modeler.MutantModeler | |
| wt_pdb_tag | mutant_modeler.MutantModeler | |
| wt_RNA_secstruct | mutant_modeler.MutantModeler | |
| wt_struct | mutant_modeler.MutantModeler | |
