remodel.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::remodel
	basic::options::OptionKeys::remodel::staged_sampling
	basic::options::OptionKeys::remodel::domainFusion
	basic::options::OptionKeys::remodel::design
	basic::options::OptionKeys::remodel::RemodelLoopMover

Variables
BooleanOptionKey const	basic::options::OptionKeys::remodel::remodel
FileOptionKey const	basic::options::OptionKeys::remodel::blueprint
FileOptionKey const	basic::options::OptionKeys::remodel::cstfile
BooleanOptionKey const	basic::options::OptionKeys::remodel::cst_fa_only
IntegerOptionKey const	basic::options::OptionKeys::remodel::cstfilter
StringOptionKey const	basic::options::OptionKeys::remodel::cen_sfxn
BooleanOptionKey const	basic::options::OptionKeys::remodel::check_scored_centroid
IntegerOptionKey const	basic::options::OptionKeys::remodel::num_trajectory
IntegerOptionKey const	basic::options::OptionKeys::remodel::save_top
BooleanOptionKey const	basic::options::OptionKeys::remodel::swap_refine_confirm_protocols
BooleanOptionKey const	basic::options::OptionKeys::remodel::bypass_fragments
BooleanOptionKey const	basic::options::OptionKeys::remodel::use_same_length_fragments
BooleanOptionKey const	basic::options::OptionKeys::remodel::no_jumps
IntegerOptionKey const	basic::options::OptionKeys::remodel::reroot_tree
BooleanOptionKey const	basic::options::OptionKeys::remodel::use_blueprint_sequence
BooleanOptionKey const	basic::options::OptionKeys::remodel::quick_and_dirty
BooleanOptionKey const	basic::options::OptionKeys::remodel::checkpoint
BooleanOptionKey const	basic::options::OptionKeys::remodel::use_pose_relax
BooleanOptionKey const	basic::options::OptionKeys::remodel::use_cart_relax
BooleanOptionKey const	basic::options::OptionKeys::remodel::free_relax
StringOptionKey const	basic::options::OptionKeys::remodel::generic_aa
RealOptionKey const	basic::options::OptionKeys::remodel::cluster_radius
BooleanOptionKey const	basic::options::OptionKeys::remodel::use_clusters
BooleanOptionKey const	basic::options::OptionKeys::remodel::run_confirmation
BooleanOptionKey const	basic::options::OptionKeys::remodel::cluster_on_entire_pose
IntegerOptionKey const	basic::options::OptionKeys::remodel::dr_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::two_chain_tree
IntegerOptionKey const	basic::options::OptionKeys::remodel::repeat_structure
IntegerOptionKey const	basic::options::OptionKeys::remodel::lh_ex_limit
StringVectorOptionKey const	basic::options::OptionKeys::remodel::lh_filter_string
IntegerOptionKey const	basic::options::OptionKeys::remodel::lh_cbreak_selection
BooleanOptionKey const	basic::options::OptionKeys::remodel::lh_closure_filter
BooleanOptionKey const	basic::options::OptionKeys::remodel::cen_minimize
IntegerOptionKey const	basic::options::OptionKeys::remodel::core_cutoff
IntegerOptionKey const	basic::options::OptionKeys::remodel::boundary_cutoff
StringOptionKey const	basic::options::OptionKeys::remodel::coreAA
StringOptionKey const	basic::options::OptionKeys::remodel::boundaryAA
StringOptionKey const	basic::options::OptionKeys::remodel::surfaceAA
BooleanOptionKey const	basic::options::OptionKeys::remodel::design_around_ligand
BooleanOptionKey const	basic::options::OptionKeys::remodel::move_ligand
BooleanOptionKey const	basic::options::OptionKeys::remodel::resclass_by_sasa
RealOptionKey const	basic::options::OptionKeys::remodel::helical_rise
RealOptionKey const	basic::options::OptionKeys::remodel::helical_radius
RealOptionKey const	basic::options::OptionKeys::remodel::helical_omega
RealVectorOptionKey const	basic::options::OptionKeys::remodel::filter_rise
RealVectorOptionKey const	basic::options::OptionKeys::remodel::filter_radius
RealVectorOptionKey const	basic::options::OptionKeys::remodel::filter_omega
RealOptionKey const	basic::options::OptionKeys::remodel::COM_sd
RealOptionKey const	basic::options::OptionKeys::remodel::COM_tolerance
RealOptionKey const	basic::options::OptionKeys::remodel::vdw
RealOptionKey const	basic::options::OptionKeys::remodel::rama
RealOptionKey const	basic::options::OptionKeys::remodel::cbeta
RealOptionKey const	basic::options::OptionKeys::remodel::cenpack
RealOptionKey const	basic::options::OptionKeys::remodel::rg_local
RealOptionKey const	basic::options::OptionKeys::remodel::hb_lrbb
RealOptionKey const	basic::options::OptionKeys::remodel::hb_srbb
RealOptionKey const	basic::options::OptionKeys::remodel::rg
RealOptionKey const	basic::options::OptionKeys::remodel::rsigma
RealOptionKey const	basic::options::OptionKeys::remodel::ss_pair
BooleanOptionKey const	basic::options::OptionKeys::remodel::build_disulf
RealOptionKey const	basic::options::OptionKeys::remodel::match_rt_limit
IntegerVectorOptionKey const	basic::options::OptionKeys::remodel::disulf_landing_range
BooleanOptionKey const	basic::options::OptionKeys::remodel::rank_by_bsasa
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::staged_sampling
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::loop_9mer_score_file
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::loop_3mer_score_file
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::all_9mer_score_file
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::all_3mer_score_file
IntegerOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::loop_9mer_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::loop_3mer_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::all_9mer_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::all_3mer_cycles
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::fa_mode
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::fa_relax_moves
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::loop_btw_parametric_components
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::pre_centroid
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::sample_over_loops
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::small_moves
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::starting_sequence
FileOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::starting_pdb
StringOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::starting_non_canonical
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::start_w_ideal_helices
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::sym_move
FileOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::residues_to_sample
BooleanOptionKey const	basic::options::OptionKeys::remodel::staged_sampling::require_frags_match_blueprint
BooleanOptionKey const	basic::options::OptionKeys::remodel::domainFusion::domainFusion
FileOptionKey const	basic::options::OptionKeys::remodel::domainFusion::insert_segment_from_pdb
FileOptionKey const	basic::options::OptionKeys::remodel::domainFusion::insert_segment2_from_pdb
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::design
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::no_design
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::design_all
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::allow_rare_aro_chi
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::skip_partial
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::design_neighbors
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::find_neighbors
BooleanOptionKey const	basic::options::OptionKeys::remodel::design::include_current
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::RemodelLoopMover
RealOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::max_linear_chainbreak
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::randomize_loops
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::use_loop_hash
FileOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::set_segment
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::allowed_closure_attempts
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::loophash_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::simultaneous_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::independent_cycles
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::boost_closure_cycles
RealOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::threshold_for_boost_closure
IntegerOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::force_cutting_index
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::force_cutting_N
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::bypass_closure
BooleanOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::cyclic_peptide
RealOptionKey const	basic::options::OptionKeys::remodel::RemodelLoopMover::temperature

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)