in.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::in
	basic::options::OptionKeys::in::dbms
	basic::options::OptionKeys::in::path
	basic::options::OptionKeys::in::file
	basic::options::OptionKeys::in::rdf

Variables
BooleanOptionKey const	basic::options::OptionKeys::in::in
FileVectorOptionKey const	basic::options::OptionKeys::in::fconfig
BooleanOptionKey const	basic::options::OptionKeys::in::no_fconfig
BooleanOptionKey const	basic::options::OptionKeys::in::skip_classic_cart_setup
BooleanOptionKey const	basic::options::OptionKeys::in::skip_new_cart_setup
StringOptionKey const	basic::options::OptionKeys::in::Ntermini
StringOptionKey const	basic::options::OptionKeys::in::Ctermini
BooleanOptionKey const	basic::options::OptionKeys::in::use_truncated_termini
BooleanOptionKey const	basic::options::OptionKeys::in::ignore_unrecognized_res
BooleanOptionKey const	basic::options::OptionKeys::in::ignore_waters
StringOptionKey const	basic::options::OptionKeys::in::water_type_if_unspecified
BooleanOptionKey const	basic::options::OptionKeys::in::guarantee_no_DNA
BooleanOptionKey const	basic::options::OptionKeys::in::add_orbitals
BooleanOptionKey const	basic::options::OptionKeys::in::show_all_fixes
BooleanOptionKey const	basic::options::OptionKeys::in::include_sugars
BooleanOptionKey const	basic::options::OptionKeys::in::include_lipids
BooleanOptionKey const	basic::options::OptionKeys::in::include_surfaces
BooleanOptionKey const	basic::options::OptionKeys::in::read_only_ATOM_entries
BooleanOptionKey const	basic::options::OptionKeys::in::auto_detect_glycan_connections
RealOptionKey const	basic::options::OptionKeys::in::max_bond_length
RealOptionKey const	basic::options::OptionKeys::in::min_bond_length
RealOptionKey const	basic::options::OptionKeys::in::glycan_virtual_offset
BooleanOptionKey const	basic::options::OptionKeys::in::membrane
RealOptionKey const	basic::options::OptionKeys::in::tuning_param
BooleanOptionKey const	basic::options::OptionKeys::in::remember_unrecognized_res
BooleanOptionKey const	basic::options::OptionKeys::in::remember_unrecognized_water
BooleanOptionKey const	basic::options::OptionKeys::in::preserve_crystinfo
BooleanOptionKey const	basic::options::OptionKeys::in::fast_restyping
BooleanOptionKey const	basic::options::OptionKeys::in::detect_oops
BooleanOptionKey const	basic::options::OptionKeys::in::obey_ssbond
BooleanOptionKey const	basic::options::OptionKeys::in::detect_disulf
RealOptionKey const	basic::options::OptionKeys::in::detect_disulf_tolerance
BooleanOptionKey const	basic::options::OptionKeys::in::constraints_from_link_records
BooleanOptionKey const	basic::options::OptionKeys::in::auto_setup_metals
BooleanOptionKey const	basic::options::OptionKeys::in::prevent_auto_setup_metal_bb_variants
RealOptionKey const	basic::options::OptionKeys::in::metals_detection_LJ_multiplier
RealOptionKey const	basic::options::OptionKeys::in::metals_distance_constraint_multiplier
RealOptionKey const	basic::options::OptionKeys::in::metals_angle_constraint_multiplier
StringVectorOptionKey const	basic::options::OptionKeys::in::name3_property_codes
StringVectorOptionKey const	basic::options::OptionKeys::in::alternate_3_letter_codes
BooleanOptionKey const	basic::options::OptionKeys::in::maintain_links
FileOptionKey const	basic::options::OptionKeys::in::fix_disulf
BooleanOptionKey const	basic::options::OptionKeys::in::missing_density_to_jump
IntegerVectorOptionKey const	basic::options::OptionKeys::in::target_residues
IntegerVectorOptionKey const	basic::options::OptionKeys::in::replonly_residues
BooleanOptionKey const	basic::options::OptionKeys::in::replonly_loops
BooleanOptionKey const	basic::options::OptionKeys::in::use_database
StringVectorOptionKey const	basic::options::OptionKeys::in::select_structures_from_database
BooleanOptionKey const	basic::options::OptionKeys::in::dbms::dbms
StringVectorOptionKey const	basic::options::OptionKeys::in::dbms::struct_ids
PathVectorOptionKey const	basic::options::OptionKeys::in::path::path
PathVectorOptionKey const	basic::options::OptionKeys::in::path::fragments
PathVectorOptionKey const	basic::options::OptionKeys::in::path::pdb
PathVectorOptionKey const	basic::options::OptionKeys::in::path::database
PathOptionKey const	basic::options::OptionKeys::in::path::database_cache_dir
PathVectorOptionKey const	basic::options::OptionKeys::in::path::bcl
BooleanOptionKey const	basic::options::OptionKeys::in::file::file
FileVectorOptionKey const	basic::options::OptionKeys::in::file::s
FileVectorOptionKey const	basic::options::OptionKeys::in::file::t
FileVectorOptionKey const	basic::options::OptionKeys::in::file::l
FileOptionKey const	basic::options::OptionKeys::in::file::job_definition_file
FileVectorOptionKey const	basic::options::OptionKeys::in::file::list
BooleanOptionKey const	basic::options::OptionKeys::in::file::srlz
BooleanOptionKey const	basic::options::OptionKeys::in::file::srlz_override
FileVectorOptionKey const	basic::options::OptionKeys::in::file::screening_list
FileOptionKey const	basic::options::OptionKeys::in::file::screening_job_file
BooleanOptionKey const	basic::options::OptionKeys::in::file::shuffle_screening_jobs
FileOptionKey const	basic::options::OptionKeys::in::file::native
FileOptionKey const	basic::options::OptionKeys::in::file::torsion_bin_probs
FileOptionKey const	basic::options::OptionKeys::in::file::PCS_frag_cst
FileOptionKey const	basic::options::OptionKeys::in::file::talos_phi_psi
FileOptionKey const	basic::options::OptionKeys::in::file::talos_cs
FileOptionKey const	basic::options::OptionKeys::in::file::ambig_talos_cs_A
FileOptionKey const	basic::options::OptionKeys::in::file::ambig_talos_cs_B
IntegerVectorOptionKey const	basic::options::OptionKeys::in::file::native_exclude_res
BooleanOptionKey const	basic::options::OptionKeys::in::file::no_detect_pseudobonds
StringVectorOptionKey const	basic::options::OptionKeys::in::file::tags
StringVectorOptionKey const	basic::options::OptionKeys::in::file::user_tags
FileOptionKey const	basic::options::OptionKeys::in::file::tagfile
FileVectorOptionKey const	basic::options::OptionKeys::in::file::frag_files
StringVectorOptionKey const	basic::options::OptionKeys::in::file::remap_pdb_atom_names_for
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_fa
BooleanOptionKey const	basic::options::OptionKeys::in::file::override_database_params
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_mol
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_mmCIF
BooleanOptionKey const	basic::options::OptionKeys::in::file::load_PDB_components
StringOptionKey const	basic::options::OptionKeys::in::file::PDB_components_directory
StringVectorOptionKey const	basic::options::OptionKeys::in::file::PDB_components_overrides
BooleanOptionKey const	basic::options::OptionKeys::in::file::check_all_PDB_components
StringOptionKey const	basic::options::OptionKeys::in::file::extra_res_database
StringOptionKey const	basic::options::OptionKeys::in::file::extra_res_pq_schema
StringOptionKey const	basic::options::OptionKeys::in::file::extra_res_database_mode
FileOptionKey const	basic::options::OptionKeys::in::file::extra_res_database_resname_list
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_cen
PathVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_path
PathVectorOptionKey const	basic::options::OptionKeys::in::file::extra_rot_lib_path
PathVectorOptionKey const	basic::options::OptionKeys::in::file::override_rot_lib_path
PathVectorOptionKey const	basic::options::OptionKeys::in::file::extra_res_batch_path
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_patch_fa
FileVectorOptionKey const	basic::options::OptionKeys::in::file::extra_patch_cen
StringOptionKey const	basic::options::OptionKeys::in::file::frag3
StringOptionKey const	basic::options::OptionKeys::in::file::frag9
StringOptionKey const	basic::options::OptionKeys::in::file::fragA
StringOptionKey const	basic::options::OptionKeys::in::file::fragB
StringOptionKey const	basic::options::OptionKeys::in::file::surface_vectors
StringOptionKey const	basic::options::OptionKeys::in::file::xyz
BooleanOptionKey const	basic::options::OptionKeys::in::file::keep_input_scores
BooleanOptionKey const	basic::options::OptionKeys::in::file::lazy_silent
FileVectorOptionKey const	basic::options::OptionKeys::in::file::silent
BooleanOptionKey const	basic::options::OptionKeys::in::file::force_silent_bitflip_on_read
FileVectorOptionKey const	basic::options::OptionKeys::in::file::atom_tree_diff
StringOptionKey const	basic::options::OptionKeys::in::file::zip
FileVectorOptionKey const	basic::options::OptionKeys::in::file::boinc_wu_zip
BooleanOptionKey const	basic::options::OptionKeys::in::file::fullatom
BooleanOptionKey const	basic::options::OptionKeys::in::file::centroid_input
BooleanOptionKey const	basic::options::OptionKeys::in::file::centroid
BooleanOptionKey const	basic::options::OptionKeys::in::file::assign_gasteiger_atom_types
StringOptionKey const	basic::options::OptionKeys::in::file::treat_residues_in_these_chains_as_separate_chemical_entities
StringOptionKey const	basic::options::OptionKeys::in::file::residue_type_set
FileOptionKey const	basic::options::OptionKeys::in::file::pca
RealOptionKey const	basic::options::OptionKeys::in::file::silent_energy_cut
FileVectorOptionKey const	basic::options::OptionKeys::in::file::silent_list
BooleanOptionKey const	basic::options::OptionKeys::in::file::silent_renumber
StringOptionKey const	basic::options::OptionKeys::in::file::silent_struct_type
BooleanOptionKey const	basic::options::OptionKeys::in::file::silent_read_through_errors
StringOptionKey const	basic::options::OptionKeys::in::file::silent_score_prefix
IntegerOptionKey const	basic::options::OptionKeys::in::file::silent_select_random
IntegerOptionKey const	basic::options::OptionKeys::in::file::silent_select_range_start
IntegerOptionKey const	basic::options::OptionKeys::in::file::silent_select_range_mul
IntegerOptionKey const	basic::options::OptionKeys::in::file::silent_select_range_len
BooleanOptionKey const	basic::options::OptionKeys::in::file::skip_failed_simulations
StringVectorOptionKey const	basic::options::OptionKeys::in::file::silent_scores_wanted
FileVectorOptionKey const	basic::options::OptionKeys::in::file::fasta
FileVectorOptionKey const	basic::options::OptionKeys::in::file::pssm
StringVectorOptionKey const	basic::options::OptionKeys::in::file::seq
FileOptionKey const	basic::options::OptionKeys::in::file::checkpoint
FileOptionKey const	basic::options::OptionKeys::in::file::binary_chk
FileVectorOptionKey const	basic::options::OptionKeys::in::file::alignment
FileVectorOptionKey const	basic::options::OptionKeys::in::file::alignment2
FileOptionKey const	basic::options::OptionKeys::in::file::rama2b_map
FileOptionKey const	basic::options::OptionKeys::in::file::psipred_ss2
FileOptionKey const	basic::options::OptionKeys::in::file::dssp
BooleanOptionKey const	basic::options::OptionKeys::in::file::fail_on_bad_hbond
FileOptionKey const	basic::options::OptionKeys::in::file::movemap
BooleanOptionKey const	basic::options::OptionKeys::in::file::repair_sidechains
BooleanOptionKey const	basic::options::OptionKeys::in::file::no_binary_dunlib
IntegerOptionKey const	basic::options::OptionKeys::in::file::extended_pose
FileVectorOptionKey const	basic::options::OptionKeys::in::file::template_pdb
FileOptionKey const	basic::options::OptionKeys::in::file::template_silent
FileVectorOptionKey const	basic::options::OptionKeys::in::file::rdc
FileVectorOptionKey const	basic::options::OptionKeys::in::file::csa
FileVectorOptionKey const	basic::options::OptionKeys::in::file::dc
FileVectorOptionKey const	basic::options::OptionKeys::in::file::burial
FileOptionKey const	basic::options::OptionKeys::in::file::hrf_ms_labeling
FileVectorOptionKey const	basic::options::OptionKeys::in::file::vall
BooleanOptionKey const	basic::options::OptionKeys::in::file::rescore
StringOptionKey const	basic::options::OptionKeys::in::file::spanfile
StringOptionKey const	basic::options::OptionKeys::in::file::lipofile
StringOptionKey const	basic::options::OptionKeys::in::file::HDX
RealOptionKey const	basic::options::OptionKeys::in::file::d2h_sa_reweight
FileOptionKey const	basic::options::OptionKeys::in::file::sucker_params
FileOptionKey const	basic::options::OptionKeys::in::file::fold_tree
BooleanOptionKey const	basic::options::OptionKeys::in::file::obey_ENDMDL
BooleanOptionKey const	basic::options::OptionKeys::in::file::new_chain_order
FileOptionKey const	basic::options::OptionKeys::in::file::ddg_predictions_file
ResidueChainVectorOptionKey const	basic::options::OptionKeys::in::file::input_res
IntegerVectorOptionKey const	basic::options::OptionKeys::in::file::minimize_res
StringOptionKey const	basic::options::OptionKeys::in::file::md_schfile
FileOptionKey const	basic::options::OptionKeys::in::file::native_contacts
BooleanOptionKey const	basic::options::OptionKeys::in::rdf::rdf
BooleanOptionKey const	basic::options::OptionKeys::in::rdf::sep_bb_ss

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)