dna.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::dna
	basic::options::OptionKeys::dna::specificity
	basic::options::OptionKeys::dna::design
	basic::options::OptionKeys::dna::design::specificity
	basic::options::OptionKeys::dna::design::reversion

Variables
BooleanOptionKey const	basic::options::OptionKeys::dna::dna
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::specificity
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::exclude_dna_dna
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::params
FileVectorOptionKey const	basic::options::OptionKeys::dna::specificity::frag_files
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::only_repack
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::design_DNA
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::soft_rep
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::dump_pdbs
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::fast
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::randomize_motif
RealOptionKey const	basic::options::OptionKeys::dna::specificity::Wfa_elec
RealOptionKey const	basic::options::OptionKeys::dna::specificity::Wdna_bs
RealOptionKey const	basic::options::OptionKeys::dna::specificity::Wdna_bp
RealOptionKey const	basic::options::OptionKeys::dna::specificity::minimize_tolerance
StringOptionKey const	basic::options::OptionKeys::dna::specificity::weights_tag
StringOptionKey const	basic::options::OptionKeys::dna::specificity::weights_tag_list
StringOptionKey const	basic::options::OptionKeys::dna::specificity::min_type
StringOptionKey const	basic::options::OptionKeys::dna::specificity::mode
StringOptionKey const	basic::options::OptionKeys::dna::specificity::score_function
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::pre_minimize
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::post_minimize
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::pre_pack
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::nloop
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::n_inner
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::n_outer
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::nstep_water
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::moving_jump
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::motif_begin
IntegerOptionKey const	basic::options::OptionKeys::dna::specificity::motif_size
StringVectorOptionKey const	basic::options::OptionKeys::dna::specificity::pdb_pos
StringVectorOptionKey const	basic::options::OptionKeys::dna::specificity::methylate
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::dna_backbone_torsion_sdevs
RealOptionKey const	basic::options::OptionKeys::dna::specificity::dna_sugar_torsion_sdev
RealOptionKey const	basic::options::OptionKeys::dna::specificity::dna_chi_torsion_sdev
StringOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_wtd_tag
BooleanOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_for_bb
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_ramp_width_A2
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_overlap_gap
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_overlap_width_A2
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_water_fade
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_wtd_prefactors
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp2
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp3
RealVectorOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_waters_ring
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_waters_donor
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_ball_bridge_angle_widthscale
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_max_angle
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_min_angle
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_occlusion_min
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_occlusion_max
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_h2o_radius
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_ramp_width_A2
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_overlap_width_A2
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_ball_overlap_width_A2
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_water_dist
RealOptionKey const	basic::options::OptionKeys::dna::specificity::lk_dome_water_adjust
BooleanOptionKey const	basic::options::OptionKeys::dna::design::design
BooleanOptionKey const	basic::options::OptionKeys::dna::design::output_unbound_pdb
RealOptionKey const	basic::options::OptionKeys::dna::design::z_cutoff
StringOptionKey const	basic::options::OptionKeys::dna::design::protein_scan
StringOptionKey const	basic::options::OptionKeys::dna::design::checkpoint
BooleanOptionKey const	basic::options::OptionKeys::dna::design::minimize
StringVectorOptionKey const	basic::options::OptionKeys::dna::design::dna_defs
StringOptionKey const	basic::options::OptionKeys::dna::design::dna_defs_file
BooleanOptionKey const	basic::options::OptionKeys::dna::design::nopdb
BooleanOptionKey const	basic::options::OptionKeys::dna::design::designable_second_shell
BooleanOptionKey const	basic::options::OptionKeys::dna::design::base_contacts_only
IntegerOptionKey const	basic::options::OptionKeys::dna::design::probe_specificity
BooleanOptionKey const	basic::options::OptionKeys::dna::design::reversion_scan
BooleanOptionKey const	basic::options::OptionKeys::dna::design::binding
RealOptionKey const	basic::options::OptionKeys::dna::design::Boltz_temp
BooleanOptionKey const	basic::options::OptionKeys::dna::design::repack_only
BooleanOptionKey const	basic::options::OptionKeys::dna::design::sparse_pdb_output
BooleanOptionKey const	basic::options::OptionKeys::dna::design::specificity::specificity
BooleanOptionKey const	basic::options::OptionKeys::dna::design::specificity::output_structures
BooleanOptionKey const	basic::options::OptionKeys::dna::design::specificity::include_dna_potentials
BooleanOptionKey const	basic::options::OptionKeys::dna::design::reversion::reversion
RealOptionKey const	basic::options::OptionKeys::dna::design::reversion::dscore_cutoff
RealOptionKey const	basic::options::OptionKeys::dna::design::reversion::dspec_cutoff

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)