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Rosetta
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Functions | |
| BooleanOptionKey const | loops::superimpose_native ("loops:superimpose_native") |
| IntegerVectorOptionKey const | loops::build_specific_loops ("loops:build_specific_loops") |
| BooleanOptionKey const | loops::random_order ("loops:random_order") |
| BooleanOptionKey const | loops::build_all_loops ("loops:build_all_loops") |
| BooleanOptionKey const | loops::fa_closure_protocol ("loops:fa_closure_protocol") |
| RealOptionKey const | loops::combine_rate ("loops:combine_rate") |
| BooleanOptionKey const | loops::skip_initial_loop_build ("loops:skip_initial_loop_build") |
| StringOptionKey const | loops::remodel ("loops:remodel") |
| StringOptionKey const | loops::intermedrelax ("loops:intermedrelax") |
| StringOptionKey const | loops::refine ("loops:refine") |
| StringOptionKey const | loops::relax ("loops:relax") |
| BooleanOptionKey const | loops::final_clean_fastrelax ("loops:final_clean_fastrelax") |
| BooleanOptionKey const | loops::relax_with_foldtree ("loops:relax_with_foldtree") |
| RealOptionKey const | loops::constrain_rigid_segments ("loops:constrain_rigid_segments") |
| StringOptionKey const | loops::loopscores ("loops:loopscores") |
| BooleanOptionKey const | loops::timer ("loops:timer") |
| BooleanOptionKey const | loops::vicinity_sampling ("loops:vicinity_sampling") |
| RealOptionKey const | loops::vicinity_degree ("loops:vicinity_degree") |
| RealOptionKey const | loops::neighbor_dist ("loops:neighbor_dist") |
| IntegerOptionKey const | loops::kic_max_seglen ("loops:kic_max_seglen") |
| BooleanOptionKey const | loops::kic_recover_last ("loops:kic_recover_last") |
| BooleanOptionKey const | loops::kic_min_after_repack ("loops:kic_min_after_repack") |
| BooleanOptionKey const | loops::optimize_only_kic_region_sidechains_after_move ("loops:optimize_only_kic_region_sidechains_after_move") |
| IntegerOptionKey const | loops::max_kic_build_attempts ("loops:max_kic_build_attempts") |
| IntegerOptionKey const | loops::remodel_kic_attempts ("loops:remodel_kic_attempts") |
| IntegerOptionKey const | loops::max_kic_perturber_samples ("loops:max_kic_perturber_samples") |
| BooleanOptionKey const | loops::nonpivot_torsion_sampling ("loops:nonpivot_torsion_sampling") |
| BooleanOptionKey const | loops::fix_ca_bond_angles ("loops:fix_ca_bond_angles") |
| BooleanOptionKey const | loops::kic_use_linear_chainbreak ("loops:kic_use_linear_chainbreak") |
| BooleanOptionKey const | loops::sample_omega_at_pre_prolines ("loops:sample_omega_at_pre_prolines") |
| BooleanOptionKey const | loops::allow_omega_move ("loops:allow_omega_move") |
| BooleanOptionKey const | loops::kic_with_cartmin ("loops:kic_with_cartmin") |
| BooleanOptionKey const | loops::allow_takeoff_torsion_move ("loops:allow_takeoff_torsion_move") |
| IntegerOptionKey const | loops::extend_length ("loops:extend_length") |
| IntegerOptionKey const | loops::perturb_outer_cycles ("loops:perturb_outer_cycles") |
| IntegerOptionKey const | loops::refine_outer_cycles ("loops:refine_outer_cycles") |
| IntegerOptionKey const | loops::max_inner_cycles ("loops:max_inner_cycles") |
| IntegerOptionKey const | loops::repack_period ("loops:repack_period") |
| RealOptionKey const | loops::remodel_init_temp ("loops:remodel_init_temp") |
| RealOptionKey const | loops::remodel_final_temp ("loops:remodel_final_temp") |
| RealOptionKey const | loops::refine_init_temp ("loops:refine_init_temp") |
| RealOptionKey const | loops::refine_final_temp ("loops:refine_final_temp") |
| IntegerOptionKey const | loops::gapspan ("loops:gapspan") |
| IntegerOptionKey const | loops::spread ("loops:spread") |
| IntegerOptionKey const | loops::kinematic_wrapper_cycles ("loops:kinematic_wrapper_cycles") |
| IntegerOptionKey const | loops::kic_num_rotamer_trials ("loops:kic_num_rotamer_trials") |
| BooleanOptionKey const | loops::kic_omega_sampling ("loops:kic_omega_sampling") |
| RealOptionKey const | loops::kic_bump_overlap_factor ("loops:kic_bump_overlap_factor") |
| IntegerOptionKey const | loops::minimize_max_iter ("loops:minimize_max_iter") |
| StringOptionKey const | loops::restrict_kic_sampling_to_torsion_string ("loops:restrict_kic_sampling_to_torsion_string") |
| BooleanOptionKey const | loops::derive_torsion_string_from_native_pose ("loops:derive_torsion_string_from_native_pose") |
| BooleanOptionKey const | loops::always_remodel_full_loop ("loops:always_remodel_full_loop") |
| BooleanOptionKey const | loops::taboo_sampling ("loops:taboo_sampling") |
| BooleanOptionKey const | loops::taboo_in_fa ("loops:taboo_in_fa") |
| BooleanOptionKey const | loops::ramp_fa_rep ("loops:ramp_fa_rep") |
| BooleanOptionKey const | loops::ramp_rama ("loops:ramp_rama") |
| BooleanOptionKey const | loops::kic_rama2b ("loops:kic_rama2b") |
| BooleanOptionKey const | loops::kic_leave_centroid_after_initial_closure ("loops:kic_leave_centroid_after_initial_closure") |
| BooleanOptionKey const | loops::legacy_kic ("loops:legacy_kic") |
| BooleanOptionKey const | loops::alternative_closure_protocol ("loops:alternative_closure_protocol") |
| RealOptionKey const | loops::chainbreak_max_accept ("loops:chainbreak_max_accept") |
| BooleanOptionKey const | loops::debug_loop_closure ("loops:debug_loop_closure") |
| BooleanOptionKey const | loops::non_ideal_loop_closing ("loops:non_ideal_loop_closing") |
| RealOptionKey const | loops::scored_frag_cycles ("loops:scored_frag_cycles") |
| RealOptionKey const | loops::short_frag_cycles ("loops:short_frag_cycles") |
| RealOptionKey const | loops::rmsd_tol ("loops:rmsd_tol") |
| RealOptionKey const | loops::chain_break_tol ("loops:chain_break_tol") |
| BooleanOptionKey const | loops::random_loop ("loops:random_loop") |
| FileVectorOptionKey const | loops::stealfrags ("loops:stealfrags") |
| IntegerOptionKey const | loops::stealfrags_times ("loops:stealfrags_times") |
| RealOptionKey const | loops::coord_cst ("loops:coord_cst") |
| RealOptionKey const | loops::skip_1mers ("loops:skip_1mers") |
| RealOptionKey const | loops::skip_3mers ("loops:skip_3mers") |
| RealOptionKey const | loops::skip_9mers ("loops:skip_9mers") |
| BooleanOptionKey const | loops::loop_model ("loops:loop_model") |
| RealOptionKey const | loops::score_filter_cutoff ("loops:score_filter_cutoff") |
| BooleanOptionKey const | loops::ccd_closure ("loops:ccd_closure") |
| BooleanOptionKey const | loops::skip_ccd_moves ("loops:skip_ccd_moves") |
| BooleanOptionKey const | loops::no_randomize_loop ("loops:no_randomize_loop") |
| BooleanOptionKey const | loops::loops_subset ("loops:loops_subset") |
| IntegerOptionKey const | loops::num_desired_loops ("loops:num_desired_loops") |
| RealOptionKey const | loops::loop_combine_rate ("loops:loop_combine_rate") |
| RealOptionKey const | loops::final_score_filter ("loops:final_score_filter") |
| BooleanOptionKey const | loops::no_combine_if_fail ("loops:no_combine_if_fail") |
| BooleanOptionKey const | loops::shorten_long_terminal_loop ("loops:shorten_long_terminal_loop") |
| IntegerOptionKey const | loops::backrub_trials ("loops:backrub_trials") |
| RealOptionKey const | loops::looprlx_cycle_ratio ("loops:looprlx_cycle_ratio") |
| RealOptionKey const | loops::extended_beta ("loops:extended_beta") |
| BooleanOptionKey const | loops::no_looprebuild ("loops:no_looprebuild") |
| BooleanOptionKey const | loops::allow_lig_move ("loops:allow_lig_move") |
| FileOptionKey const | loops::keep_natro ("loops:keep_natro") |
| IntegerOptionKey const | loops::refine_design_iterations ("loops:refine_design_iterations") |
| BooleanOptionKey const | loops::ccd::ccd ("loops:ccd") |
| RealOptionKey const | loops::ccd::max_rama_score_increase ("loops:ccd:max_rama_score_increase") |
| RealVectorOptionKey const | loops::ccd::max_torsion_delta_per_move ("loops:ccd:max_torsion_delta_per_move") |
| RealVectorOptionKey const | loops::ccd::max_torsion_delta ("loops:ccd:max_torsion_delta") |
| RealOptionKey const | loops::ccd::tolerance ("loops:ccd:tolerance") |
| IntegerOptionKey const | loops::ccd::max_cycles ("loops:ccd:max_cycles") |
| BooleanOptionKey const | loops::ccd::check_rama_scores ("loops:ccd:check_rama_scores") |
| BooleanOptionKey const | loops::ccd::rama_2b ("loops:ccd:rama_2b") |
| RealOptionKey const | loops::ccd::temperature ("loops:ccd:temperature") |
| BooleanOptionKey const | intf::intf ("intf") |
| StringOptionKey const | intf::chains ("intf:chains") |
| BooleanOptionKey const | machine_learning::machine_learning ("machine_learning") |
| BooleanOptionKey const | machine_learning::auto_download ("machine_learning:auto_download") |
| BooleanOptionKey const | mp::mp ("mp") |
| BooleanOptionKey const | mp::restore_lazaridis_imm_behavior ("mp:restore_lazaridis_imm_behavior") |
| RealOptionKey const | mp::thickness ("mp:thickness") |
| RealOptionKey const | mp::membrane_core ("mp:membrane_core") |
| RealOptionKey const | mp::steepness ("mp:steepness") |
| StringOptionKey const | mp::geometry ("mp:geometry") |
| RealVectorOptionKey const | mp::center_start ("mp:center_start") |
| RealOptionKey const | mp::center_delta ("mp:center_delta") |
| RealOptionKey const | mp::center_search_cycles ("mp:center_search_cycles") |
| RealVectorOptionKey const | mp::normal_start ("mp:normal_start") |
| RealOptionKey const | mp::normal_angle_start ("mp:normal_angle_start") |
| RealOptionKey const | mp::normal_angle_delta ("mp:normal_angle_delta") |
| RealOptionKey const | mp::normal_search_cycles ("mp:normal_search_cycles") |
| RealOptionKey const | mp::chain_normal_angle_max ("mp:chain_normal_angle_max") |
| RealOptionKey const | mp::pose_normal_angle_max ("mp:pose_normal_angle_max") |
| BooleanOptionKey const | mp::no_interpolate_Mpair ("mp:no_interpolate_Mpair") |
| BooleanOptionKey const | mp::Hbond_depth_correction ("mp:Hbond_depth_correction") |
| BooleanOptionKey const | mp::TMprojection ("mp:TMprojection") |
| RealOptionKey const | mp::wt_TMprojection ("mp:wt_TMprojection") |
| BooleanOptionKey const | mp::non_helix ("mp:non_helix") |
| RealOptionKey const | mp::wt_non_helix ("mp:wt_non_helix") |
| BooleanOptionKey const | mp::termini ("mp:termini") |
| RealOptionKey const | mp::wt_termini ("mp:wt_termini") |
| BooleanOptionKey const | mp::secstruct ("mp:secstruct") |
| RealOptionKey const | mp::wt_secstruct ("mp:wt_secstruct") |
| BooleanOptionKey const | mp::spanning ("mp:spanning") |
| RealOptionKey const | mp::wt_spanning ("mp:wt_spanning") |
| BooleanOptionKey const | mp::lipids::lipids ("mp:lipids") |
| StringOptionKey const | mp::lipids::composition ("mp:lipids:composition") |
| RealOptionKey const | mp::lipids::temperature ("mp:lipids:temperature") |
| BooleanOptionKey const | mp::lipids::has_pore ("mp:lipids:has_pore") |
| BooleanOptionKey const | mp::viewer::viewer ("mp:viewer") |
| RealOptionKey const | mp::viewer::thickness ("mp:viewer:thickness") |
| IntegerOptionKey const | mp::viewer::num_points ("mp:viewer:num_points") |
| BooleanOptionKey const | mp::visualize::visualize ("mp:visualize") |
| BooleanOptionKey const | mp::visualize::embedding ("mp:visualize:embedding") |
| RealOptionKey const | mp::visualize::spacing ("mp:visualize:spacing") |
| RealOptionKey const | mp::visualize::width ("mp:visualize:width") |
| RealOptionKey const | mp::visualize::thickness ("mp:visualize:thickness") |
| RealOptionKey const | mp::visualize::plane_radius ("mp:visualize:plane_radius") |
| BooleanOptionKey const | mp::scoring::scoring ("mp:scoring") |
| BooleanOptionKey const | mp::scoring::hbond ("mp:scoring:hbond") |
| BooleanOptionKey const | mp::scoring::analytic_membetable_evaluation ("mp:scoring:analytic_membetable_evaluation") |
| BooleanOptionKey const | mp::setup::setup ("mp:setup") |
| StringVectorOptionKey const | mp::setup::spanfiles ("mp:setup:spanfiles") |
| StringOptionKey const | mp::setup::span1 ("mp:setup:span1") |
| StringOptionKey const | mp::setup::span2 ("mp:setup:span2") |
| BooleanOptionKey const | mp::setup::spans_from_structure ("mp:setup:spans_from_structure") |
| StringOptionKey const | mp::setup::lipsfile ("mp:setup:lipsfile") |
| RealVectorOptionKey const | mp::setup::center ("mp:setup:center") |
| RealVectorOptionKey const | mp::setup::normal ("mp:setup:normal") |
| RealOptionKey const | mp::setup::membrane_rsd ("mp:setup:membrane_rsd") |
| BooleanOptionKey const | mp::setup::transform_into_membrane ("mp:setup:transform_into_membrane") |
| BooleanOptionKey const | mp::setup::position_from_topo ("mp:setup:position_from_topo") |
| BooleanOptionKey const | mp::setup::optimize1 ("mp:setup:optimize1") |
| BooleanOptionKey const | mp::setup::optimize2 ("mp:setup:optimize2") |
| BooleanOptionKey const | mp::lipid_acc::lipid_acc ("mp:lipid_acc") |
| RealOptionKey const | mp::lipid_acc::angle_cutoff ("mp:lipid_acc:angle_cutoff") |
| RealOptionKey const | mp::lipid_acc::slice_width ("mp:lipid_acc:slice_width") |
| RealOptionKey const | mp::lipid_acc::shell_radius ("mp:lipid_acc:shell_radius") |
| RealOptionKey const | mp::lipid_acc::dist_cutoff ("mp:lipid_acc:dist_cutoff") |
| BooleanOptionKey const | mp::lipid_acc::tm_alpha ("mp:lipid_acc:tm_alpha") |
| BooleanOptionKey const | mp::geo::geo ("mp:geo") |
| RealOptionKey const | mp::geo::bicelle_radius ("mp:geo:bicelle_radius") |
| RealOptionKey const | mp::geo::vesicle_radius ("mp:geo:vesicle_radius") |
| RealOptionKey const | mp::geo::double_vesicle_inner_radius ("mp:geo:double_vesicle_inner_radius") |
| RealOptionKey const | mp::geo::double_vesicle_distance ("mp:geo:double_vesicle_distance") |
| BooleanOptionKey const | mp::transform::transform ("mp:transform") |
| BooleanOptionKey const | mp::transform::optimize_embedding ("mp:transform:optimize_embedding") |
| BooleanOptionKey const | mp::assembly::assembly ("mp:assembly") |
| IntegerOptionKey const | mp::assembly::TM_pose_number ("mp:assembly:TM_pose_number") |
| StringVectorOptionKey const | mp::assembly::poses ("mp:assembly:poses") |
| BooleanOptionKey const | mp::dock::dock ("mp:dock") |
| StringOptionKey const | mp::dock::weights_cen ("mp:dock:weights_cen") |
| StringOptionKey const | mp::dock::weights_fa ("mp:dock:weights_fa") |
| BooleanOptionKey const | mp::dock::lowres ("mp:dock:lowres") |
| BooleanOptionKey const | mp::dock::allow_flips ("mp:dock:allow_flips") |
| BooleanOptionKey const | mp::dock::flexible_bb ("mp:dock:flexible_bb") |
| BooleanOptionKey const | mp::dock::flexible_sc ("mp:dock:flexible_sc") |
| RealOptionKey const | mp::dock::slide_threshold ("mp:dock:slide_threshold") |
| BooleanOptionKey const | mp::quickrelax::quickrelax ("mp:quickrelax") |
| RealOptionKey const | mp::quickrelax::angle_max ("mp:quickrelax:angle_max") |
| StringOptionKey const | mp::quickrelax::nmoves ("mp:quickrelax:nmoves") |
| BooleanOptionKey const | mp::quickrelax::repack_again ("mp:quickrelax:repack_again") |
| BooleanOptionKey const | mp::mutate_relax::mutate_relax ("mp:mutate_relax") |
| StringVectorOptionKey const | mp::mutate_relax::mutation ("mp:mutate_relax:mutation") |
| StringOptionKey const | mp::mutate_relax::mutant_file ("mp:mutate_relax:mutant_file") |
| IntegerOptionKey const | mp::mutate_relax::nmodels ("mp:mutate_relax:nmodels") |
| BooleanOptionKey const | mp::mutate_relax::repack_mutation_only ("mp:mutate_relax:repack_mutation_only") |
| RealOptionKey const | mp::mutate_relax::repack_radius ("mp:mutate_relax:repack_radius") |
| BooleanOptionKey const | mp::mutate_relax::relax ("mp:mutate_relax:relax") |
| BooleanOptionKey const | mp::benchmark::benchmark ("mp:benchmark") |
| BooleanOptionKey const | mp::benchmark::ideal_helix::ideal_helix ("mp:benchmark:ideal_helix") |
| RealOptionKey const | mp::benchmark::ideal_helix::helix_start ("mp:benchmark:ideal_helix:helix_start") |
| RealOptionKey const | mp::benchmark::ideal_helix::helix_end ("mp:benchmark:ideal_helix:helix_end") |
| BooleanOptionKey const | mp::benchmark::tilt_angle::tilt_angle ("mp:benchmark:tilt_angle") |
| StringOptionKey const | mp::benchmark::tilt_angle::output ("mp:benchmark:tilt_angle:output") |
| BooleanOptionKey const | mp::output::output ("mp:output") |
| BooleanOptionKey const | mp::output::normalize_to_thk ("mp:output:normalize_to_thk") |
| BooleanOptionKey const | mp::output::output_mem_to_pdb ("mp:output:output_mem_to_pdb") |
| BooleanOptionKey const | membrane::membrane ("membrane") |
| IntegerOptionKey const | membrane::normal_cycles ("membrane:normal_cycles") |
| RealOptionKey const | membrane::normal_mag ("membrane:normal_mag") |
| RealOptionKey const | membrane::center_mag ("membrane:center_mag") |
| RealOptionKey const | membrane::smooth_move_frac ("membrane:smooth_move_frac") |
| BooleanOptionKey const | membrane::no_interpolate_Mpair ("membrane:no_interpolate_Mpair") |
| BooleanOptionKey const | membrane::Menv_penalties ("membrane:Menv_penalties") |
| BooleanOptionKey const | membrane::Membed_init ("membrane:Membed_init") |
| BooleanOptionKey const | membrane::Fa_Membed_update ("membrane:Fa_Membed_update") |
| BooleanOptionKey const | membrane::center_search ("membrane:center_search") |
| BooleanOptionKey const | membrane::normal_search ("membrane:normal_search") |
| IntegerOptionKey const | membrane::center_max_delta ("membrane:center_max_delta") |
| IntegerOptionKey const | membrane::normal_start_angle ("membrane:normal_start_angle") |
| IntegerOptionKey const | membrane::normal_delta_angle ("membrane:normal_delta_angle") |
| IntegerOptionKey const | membrane::normal_max_angle ("membrane:normal_max_angle") |
| BooleanOptionKey const | membrane::debug ("membrane:debug") |
| BooleanOptionKey const | membrane::fixed_membrane ("membrane:fixed_membrane") |
| RealVectorOptionKey const | membrane::membrane_center ("membrane:membrane_center") |
| RealVectorOptionKey const | membrane::membrane_normal ("membrane:membrane_normal") |
| BooleanOptionKey const | membrane::view ("membrane:view") |
| BooleanOptionKey const | membrane::Mhbond_depth ("membrane:Mhbond_depth") |
| RealOptionKey const | membrane::thickness ("membrane:thickness") |
| BooleanOptionKey const | mistakes::mistakes ("mistakes") |
| BooleanOptionKey const | mistakes::restore_pre_talaris_2013_behavior ("mistakes:restore_pre_talaris_2013_behavior") |
| BooleanOptionKey const | mistakes::chemical::chemical ("mistakes:chemical") |
| BooleanOptionKey const | mistakes::chemical::pre_talaris2013_geometries ("mistakes:chemical:pre_talaris2013_geometries") |
| BooleanOptionKey const | MonteCarlo::MonteCarlo ("MonteCarlo") |
| RealOptionKey const | MonteCarlo::temp_initial ("MonteCarlo:temp_initial") |
| RealOptionKey const | MonteCarlo::temp_final ("MonteCarlo:temp_final") |
| BooleanOptionKey const | optimization::optimization ("optimization") |
| IntegerOptionKey const | optimization::default_max_cycles ("optimization:default_max_cycles") |
| RealOptionKey const | optimization::armijo_min_stepsize ("optimization:armijo_min_stepsize") |
| RealOptionKey const | optimization::scale_normalmode_dampen ("optimization:scale_normalmode_dampen") |
| IntegerOptionKey const | optimization::lbfgs_M ("optimization:lbfgs_M") |
| RealOptionKey const | optimization::scale_d ("optimization:scale_d") |
| RealOptionKey const | optimization::scale_theta ("optimization:scale_theta") |
| RealOptionKey const | optimization::scale_rb ("optimization:scale_rb") |
| RealOptionKey const | optimization::scale_rbangle ("optimization:scale_rbangle") |
| BooleanOptionKey const | optimization::scmin_nonideal ("optimization:scmin_nonideal") |
| BooleanOptionKey const | optimization::scmin_cartesian ("optimization:scmin_cartesian") |
| BooleanOptionKey const | optimization::nonideal ("optimization:nonideal") |
| BooleanOptionKey const | optimization::old_sym_min ("optimization:old_sym_min") |
| BooleanOptionKey const | optimization::debug_inaccurate_G ("optimization:debug_inaccurate_G") |
| RealOptionKey const | optimization::cmaes_rgsigma ("optimization:cmaes_rgsigma") |
| IntegerOptionKey const | optimization::cmaes_lambda ("optimization:cmaes_lambda") |
| BooleanOptionKey const | orbitals::orbitals ("orbitals") |
| BooleanOptionKey const | orbitals::Hpol ("orbitals:Hpol") |
| BooleanOptionKey const | orbitals::Haro ("orbitals:Haro") |
| BooleanOptionKey const | orbitals::bb_stats ("orbitals:bb_stats") |
| BooleanOptionKey const | orbitals::sc_stats ("orbitals:sc_stats") |
| BooleanOptionKey const | pose_metrics::pose_metrics ("pose_metrics") |
| RealOptionKey const | pose_metrics::atomic_burial_cutoff ("pose_metrics:atomic_burial_cutoff") |
| RealOptionKey const | pose_metrics::sasa_calculator_probe_radius ("pose_metrics:sasa_calculator_probe_radius") |
| RealOptionKey const | pose_metrics::interface_cutoff ("pose_metrics:interface_cutoff") |
| IntegerOptionKey const | pose_metrics::min_sequence_separation ("pose_metrics:min_sequence_separation") |
| RealOptionKey const | pose_metrics::contact_cutoffE ("pose_metrics:contact_cutoffE") |
| RealOptionKey const | pose_metrics::neighbor_by_distance_cutoff ("pose_metrics:neighbor_by_distance_cutoff") |
| RealOptionKey const | pose_metrics::inter_group_neighbors_cutoff ("pose_metrics:inter_group_neighbors_cutoff") |
| RealOptionKey const | pose_metrics::semiex_water_burial_cutoff ("pose_metrics:semiex_water_burial_cutoff") |
| BooleanOptionKey const | pose_metrics::shobuns::shobuns ("pose_metrics:shobuns") |
| StringOptionKey const | pose_metrics::shobuns::tgt_amino ("pose_metrics:shobuns:tgt_amino") |
| StringOptionKey const | pose_metrics::shobuns::tgt_atom ("pose_metrics:shobuns:tgt_atom") |
| FileOptionKey const | pose_metrics::shobuns::tgt_res ("pose_metrics:shobuns:tgt_res") |
| RealOptionKey const | pose_metrics::shobuns::sho_cutoff ("pose_metrics:shobuns:sho_cutoff") |
| BooleanOptionKey const | rigid::rigid ("rigid") |
| RealOptionKey const | rigid::chainbreak_bias ("rigid:chainbreak_bias") |
| BooleanOptionKey const | rigid::close_loops ("rigid:close_loops") |
| IntegerOptionKey const | rigid::fragment_cycles ("rigid:fragment_cycles") |
| BooleanOptionKey const | rigid::log_accepted_moves ("rigid:log_accepted_moves") |
| RealOptionKey const | rigid::max_ca_ca_dist ("rigid:max_ca_ca_dist") |
| FileOptionKey const | rigid::patch ("rigid:patch") |
| IntegerOptionKey const | rigid::residues_backbone_move ("rigid:residues_backbone_move") |
| RealOptionKey const | rigid::rotation ("rigid:rotation") |
| FileOptionKey const | rigid::sampling_prob ("rigid:sampling_prob") |
| StringOptionKey const | rigid::score ("rigid:score") |
| IntegerOptionKey const | rigid::sequence_separation ("rigid:sequence_separation") |
| IntegerOptionKey const | rigid::small_cycles ("rigid:small_cycles") |
| IntegerOptionKey const | rigid::stages ("rigid:stages") |
| RealOptionKey const | rigid::temperature ("rigid:temperature") |
| RealOptionKey const | rigid::translation ("rigid:translation") |
| BooleanOptionKey const | sasa::sasa ("sasa") |
| StringOptionKey const | sasa::method ("sasa:method") |
| BooleanOptionKey const | sasa::include_hydrogens_explicitly ("sasa:include_hydrogens_explicitly") |
| RealOptionKey const | sasa::probe_radius ("sasa:probe_radius") |
| BooleanOptionKey const | sasa::include_probe_radius_in_atom_radii ("sasa:include_probe_radius_in_atom_radii") |
| BooleanOptionKey const | sasa::include_only_C_S_in_hsasa ("sasa:include_only_C_S_in_hsasa") |
| BooleanOptionKey const | sasa::exclude_polar_atoms_by_charge_in_hsasa ("sasa:exclude_polar_atoms_by_charge_in_hsasa") |
| RealOptionKey const | sasa::polar_charge_cutoff ("sasa:polar_charge_cutoff") |
1.9.1