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Rosetta
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Functions | |
| RealOptionKey const | docking::SymDock_lowres_filter ("docking:SymDock_lowres_filter") |
| IntegerVectorOptionKey const | docking::multibody ("docking:multibody") |
| BooleanOptionKey const | docking::ignore_default_docking_task ("docking:ignore_default_docking_task") |
| StringOptionKey const | docking::low_patch ("docking:low_patch") |
| StringOptionKey const | docking::high_patch ("docking:high_patch") |
| StringOptionKey const | docking::high_min_patch ("docking:high_min_patch") |
| StringOptionKey const | docking::pack_patch ("docking:pack_patch") |
| BooleanOptionKey const | docking::use_legacy_protocol ("docking:use_legacy_protocol") |
| RealOptionKey const | docking::docklowres_trans_magnitude ("docking:docklowres_trans_magnitude") |
| RealOptionKey const | docking::docklowres_rot_magnitude ("docking:docklowres_rot_magnitude") |
| BooleanOptionKey const | docking::enable_pymol_viewer ("docking:enable_pymol_viewer") |
| BooleanOptionKey const | docking::SymDock_reduce_motif_dock_weights ("docking:SymDock_reduce_motif_dock_weights") |
| RealOptionKey const | docking::SymDock_fa_rep_max ("docking:SymDock_fa_rep_max") |
| RealOptionKey const | docking::SymDock_fa_sol_max ("docking:SymDock_fa_sol_max") |
| BooleanOptionKey const | docking::ligand::ligand ("docking:ligand") |
| StringOptionKey const | docking::ligand::protocol ("docking:ligand:protocol") |
| BooleanOptionKey const | docking::ligand::soft_rep ("docking:ligand:soft_rep") |
| BooleanOptionKey const | docking::ligand::tweak_sxfn ("docking:ligand:tweak_sxfn") |
| BooleanOptionKey const | docking::ligand::old_estat ("docking:ligand:old_estat") |
| BooleanOptionKey const | docking::ligand::random_conformer ("docking:ligand:random_conformer") |
| IntegerOptionKey const | docking::ligand::improve_orientation ("docking:ligand:improve_orientation") |
| BooleanOptionKey const | docking::ligand::mutate_same_name3 ("docking:ligand:mutate_same_name3") |
| RealOptionKey const | docking::ligand::subset_to_keep ("docking:ligand:subset_to_keep") |
| RealOptionKey const | docking::ligand::min_rms ("docking:ligand:min_rms") |
| IntegerOptionKey const | docking::ligand::max_poses ("docking:ligand:max_poses") |
| BooleanOptionKey const | docking::ligand::minimize_ligand ("docking:ligand:minimize_ligand") |
| RealOptionKey const | docking::ligand::harmonic_torsions ("docking:ligand:harmonic_torsions") |
| BooleanOptionKey const | docking::ligand::use_ambig_constraints ("docking:ligand:use_ambig_constraints") |
| IntegerOptionKey const | docking::ligand::shear_moves ("docking:ligand:shear_moves") |
| BooleanOptionKey const | docking::ligand::minimize_backbone ("docking:ligand:minimize_backbone") |
| RealOptionKey const | docking::ligand::harmonic_Calphas ("docking:ligand:harmonic_Calphas") |
| RealOptionKey const | docking::ligand::tether_ligand ("docking:ligand:tether_ligand") |
| RealVectorOptionKey const | docking::ligand::start_from ("docking:ligand:start_from") |
| StringOptionKey const | docking::ligand::option_file ("docking:ligand:option_file") |
| RealOptionKey const | docking::ligand::ligand_ensemble ("docking:ligand:ligand_ensemble") |
| IntegerOptionKey const | docking::ligand::iphold_cen_cycles ("docking:ligand:iphold_cen_cycles") |
| IntegerOptionKey const | docking::ligand::iphold_fa_cycles ("docking:ligand:iphold_fa_cycles") |
| BooleanOptionKey const | docking::ligand::grid::grid ("docking:ligand:grid") |
| FileOptionKey const | docking::ligand::grid::grid_kin ("docking:ligand:grid:grid_kin") |
| FileOptionKey const | docking::ligand::grid::grid_map ("docking:ligand:grid:grid_map") |
| BooleanOptionKey const | DomainAssembly::DomainAssembly ("DomainAssembly") |
| BooleanOptionKey const | DomainAssembly::da_setup ("DomainAssembly:da_setup") |
| FileOptionKey const | DomainAssembly::da_setup_option_file ("DomainAssembly:da_setup_option_file") |
| FileOptionKey const | DomainAssembly::da_setup_output_pdb ("DomainAssembly:da_setup_output_pdb") |
| FileOptionKey const | DomainAssembly::da_linker_file ("DomainAssembly:da_linker_file") |
| FileOptionKey const | DomainAssembly::da_require_buried ("DomainAssembly:da_require_buried") |
| FileOptionKey const | DomainAssembly::da_start_pdb ("DomainAssembly:da_start_pdb") |
| BooleanOptionKey const | DomainAssembly::run_fullatom ("DomainAssembly:run_fullatom") |
| BooleanOptionKey const | DomainAssembly::run_centroid ("DomainAssembly:run_centroid") |
| BooleanOptionKey const | DomainAssembly::run_centroid_abinitio ("DomainAssembly:run_centroid_abinitio") |
| IntegerOptionKey const | DomainAssembly::da_nruns ("DomainAssembly:da_nruns") |
| IntegerOptionKey const | DomainAssembly::da_start_pdb_num ("DomainAssembly:da_start_pdb_num") |
| FileOptionKey const | DomainAssembly::da_linker_file_rna ("DomainAssembly:da_linker_file_rna") |
| StringOptionKey const | DomainAssembly::residues_repack_only ("DomainAssembly:residues_repack_only") |
| FileOptionKey const | DomainAssembly::da_eval_pose_map ("DomainAssembly:da_eval_pose_map") |
| BooleanOptionKey const | dump_trajectory::dump_trajectory ("dump_trajectory") |
| StringOptionKey const | dump_trajectory::prefix ("dump_trajectory:prefix") |
| BooleanOptionKey const | dump_trajectory::gz ("dump_trajectory:gz") |
| IntegerOptionKey const | dump_trajectory::stride ("dump_trajectory:stride") |
| BooleanOptionKey const | edensity::edensity ("edensity") |
| BooleanOptionKey const | edensity::debug ("edensity:debug") |
| StringOptionKey const | edensity::mapfile ("edensity:mapfile") |
| RealOptionKey const | edensity::mapreso ("edensity:mapreso") |
| RealOptionKey const | edensity::grid_spacing ("edensity:grid_spacing") |
| RealOptionKey const | edensity::centroid_density_mass ("edensity:centroid_density_mass") |
| IntegerOptionKey const | edensity::sliding_window ("edensity:sliding_window") |
| BooleanOptionKey const | edensity::cryoem_scatterers ("edensity:cryoem_scatterers") |
| RealOptionKey const | edensity::force_apix ("edensity:force_apix") |
| RealOptionKey const | edensity::fastdens_wt ("edensity:fastdens_wt") |
| RealVectorOptionKey const | edensity::fastdens_params ("edensity:fastdens_params") |
| BooleanOptionKey const | edensity::legacy_fastdens_score ("edensity:legacy_fastdens_score") |
| RealOptionKey const | edensity::sliding_window_wt ("edensity:sliding_window_wt") |
| BooleanOptionKey const | edensity::score_sliding_window_context ("edensity:score_sliding_window_context") |
| RealOptionKey const | edensity::whole_structure_ca_wt ("edensity:whole_structure_ca_wt") |
| RealOptionKey const | edensity::whole_structure_allatom_wt ("edensity:whole_structure_allatom_wt") |
| BooleanOptionKey const | edensity::debug_derivatives ("edensity:debug_derivatives") |
| StringOptionKey const | edensity::realign ("edensity:realign") |
| StringOptionKey const | edensity::membrane_axis ("edensity:membrane_axis") |
| RealOptionKey const | edensity::atom_mask ("edensity:atom_mask") |
| RealOptionKey const | edensity::atom_mask_min ("edensity:atom_mask_min") |
| RealOptionKey const | edensity::ca_mask ("edensity:ca_mask") |
| BooleanOptionKey const | edensity::score_symm_complex ("edensity:score_symm_complex") |
| RealOptionKey const | edensity::sc_scaling ("edensity:sc_scaling") |
| IntegerOptionKey const | edensity::n_kbins ("edensity:n_kbins") |
| BooleanOptionKey const | edensity::unmask_bb ("edensity:unmask_bb") |
| BooleanOptionKey const | edensity::render_density ("edensity:render_density") |
| BooleanOptionKey const | edensity::periodicity ("edensity:periodicity") |
| BooleanOptionKey const | enzdes::enzdes ("enzdes") |
| StringOptionKey const | enzdes::checkpoint ("enzdes:checkpoint") |
| BooleanOptionKey const | enzdes::enz_score ("enzdes:enz_score") |
| BooleanOptionKey const | enzdes::enz_repack ("enzdes:enz_repack") |
| BooleanOptionKey const | enzdes::cst_opt ("enzdes:cst_opt") |
| BooleanOptionKey const | enzdes::cst_predock ("enzdes:cst_predock") |
| RealOptionKey const | enzdes::trans_magnitude ("enzdes:trans_magnitude") |
| RealOptionKey const | enzdes::rot_magnitude ("enzdes:rot_magnitude") |
| RealOptionKey const | enzdes::dock_trials ("enzdes:dock_trials") |
| BooleanOptionKey const | enzdes::cst_min ("enzdes:cst_min") |
| BooleanOptionKey const | enzdes::cst_design ("enzdes:cst_design") |
| IntegerOptionKey const | enzdes::design_min_cycles ("enzdes:design_min_cycles") |
| BooleanOptionKey const | enzdes::make_consensus_mutations ("enzdes:make_consensus_mutations") |
| BooleanOptionKey const | enzdes::bb_min ("enzdes:bb_min") |
| RealOptionKey const | enzdes::bb_min_allowed_dev ("enzdes:bb_min_allowed_dev") |
| RealOptionKey const | enzdes::loop_bb_min_allowed_dev ("enzdes:loop_bb_min_allowed_dev") |
| RealOptionKey const | enzdes::minimize_ligand_torsions ("enzdes:minimize_ligand_torsions") |
| RealOptionKey const | enzdes::minimize_all_ligand_torsions ("enzdes:minimize_all_ligand_torsions") |
| BooleanOptionKey const | enzdes::chi_min ("enzdes:chi_min") |
| BooleanOptionKey const | enzdes::min_all_jumps ("enzdes:min_all_jumps") |
| BooleanOptionKey const | enzdes::cst_dock ("enzdes:cst_dock") |
| BooleanOptionKey const | enzdes::run_ligand_motifs ("enzdes:run_ligand_motifs") |
| BooleanOptionKey const | enzdes::enz_debug ("enzdes:enz_debug") |
| FileOptionKey const | enzdes::cstfile ("enzdes:cstfile") |
| FileOptionKey const | enzdes::enz_loops_file ("enzdes:enz_loops_file") |
| BooleanOptionKey const | enzdes::flexbb_protocol ("enzdes:flexbb_protocol") |
| BooleanOptionKey const | enzdes::remodel_protocol ("enzdes:remodel_protocol") |
| BooleanOptionKey const | enzdes::kic_loop_sampling ("enzdes:kic_loop_sampling") |
| StringOptionKey const | enzdes::dump_loop_samples ("enzdes:dump_loop_samples") |
| BooleanOptionKey const | enzdes::fix_catalytic_aa ("enzdes:fix_catalytic_aa") |
| IntegerOptionKey const | enzdes::additional_packing_ligand_rb_confs ("enzdes:additional_packing_ligand_rb_confs") |
| IntegerOptionKey const | enzdes::ex_catalytic_rot ("enzdes:ex_catalytic_rot") |
| IntegerOptionKey const | enzdes::single_loop_ensemble_size ("enzdes:single_loop_ensemble_size") |
| IntegerOptionKey const | enzdes::loop_generator_trials ("enzdes:loop_generator_trials") |
| BooleanOptionKey const | enzdes::no_catres_min_in_loopgen ("enzdes:no_catres_min_in_loopgen") |
| RealOptionKey const | enzdes::mc_kt_low ("enzdes:mc_kt_low") |
| RealOptionKey const | enzdes::mc_kt_high ("enzdes:mc_kt_high") |
| RealOptionKey const | enzdes::min_cacb_deviation ("enzdes:min_cacb_deviation") |
| RealOptionKey const | enzdes::max_bb_deviation ("enzdes:max_bb_deviation") |
| RealOptionKey const | enzdes::max_bb_deviation_from_startstruct ("enzdes:max_bb_deviation_from_startstruct") |
| IntegerOptionKey const | enzdes::remodel_trials ("enzdes:remodel_trials") |
| BooleanOptionKey const | enzdes::remodel_secmatch ("enzdes:remodel_secmatch") |
| BooleanOptionKey const | enzdes::dump_inverse_rotamers ("enzdes:dump_inverse_rotamers") |
| RealOptionKey const | enzdes::remodel_aggressiveness ("enzdes:remodel_aggressiveness") |
| RealOptionKey const | enzdes::favor_native_res ("enzdes:favor_native_res") |
| BooleanOptionKey const | enzdes::detect_design_interface ("enzdes:detect_design_interface") |
| BooleanOptionKey const | enzdes::include_catres_in_interface_detection ("enzdes:include_catres_in_interface_detection") |
| BooleanOptionKey const | enzdes::arg_sweep_interface ("enzdes:arg_sweep_interface") |
| RealOptionKey const | enzdes::arg_sweep_cutoff ("enzdes:arg_sweep_cutoff") |
| RealOptionKey const | enzdes::cut1 ("enzdes:cut1") |
| RealOptionKey const | enzdes::cut2 ("enzdes:cut2") |
| RealOptionKey const | enzdes::cut3 ("enzdes:cut3") |
| RealOptionKey const | enzdes::cut4 ("enzdes:cut4") |
| RealOptionKey const | enzdes::lig_packer_weight ("enzdes:lig_packer_weight") |
| BooleanOptionKey const | enzdes::no_unconstrained_repack ("enzdes:no_unconstrained_repack") |
| RealOptionKey const | enzdes::secmatch_Ecutoff ("enzdes:secmatch_Ecutoff") |
| FileOptionKey const | enzdes::change_lig ("enzdes:change_lig") |
| StringOptionKey const | enzdes::process_ligrot_separately ("enzdes:process_ligrot_separately") |
| BooleanOptionKey const | enzdes::start_from_random_rb_conf ("enzdes:start_from_random_rb_conf") |
| RealOptionKey const | enzdes::bb_bump_cutoff ("enzdes:bb_bump_cutoff") |
| RealOptionKey const | enzdes::sc_sc_bump_cutoff ("enzdes:sc_sc_bump_cutoff") |
| BooleanOptionKey const | enzdes::no_packstat_calculation ("enzdes:no_packstat_calculation") |
| StringOptionKey const | enzdes::compare_native ("enzdes:compare_native") |
| BooleanOptionKey const | enzdes::final_repack_without_ligand ("enzdes:final_repack_without_ligand") |
| BooleanOptionKey const | enzdes::dump_final_repack_without_ligand_pdb ("enzdes:dump_final_repack_without_ligand_pdb") |
| BooleanOptionKey const | enzdes::parser_read_cloud_pdb ("enzdes:parser_read_cloud_pdb") |
| BooleanOptionKey const | epr_deer::epr_deer ("epr_deer") |
| FileVectorOptionKey const | epr_deer::input_files ("epr_deer:input_files") |
| FileVectorOptionKey const | epr_deer::coords_files ("epr_deer:coords_files") |
| BooleanOptionKey const | epr_deer::print_data ("epr_deer:print_data") |
| BooleanOptionKey const | fast_loops::fast_loops ("fast_loops") |
| RealOptionKey const | fast_loops::window_accept_ratio ("fast_loops:window_accept_ratio") |
| IntegerOptionKey const | fast_loops::nr_scored_sampling_passes ("fast_loops:nr_scored_sampling_passes") |
| IntegerOptionKey const | fast_loops::nr_scored_fragments ("fast_loops:nr_scored_fragments") |
| IntegerOptionKey const | fast_loops::min_breakout_good_loops ("fast_loops:min_breakout_good_loops") |
| IntegerOptionKey const | fast_loops::min_breakout_fast_loops ("fast_loops:min_breakout_fast_loops") |
| IntegerOptionKey const | fast_loops::min_good_loops ("fast_loops:min_good_loops") |
| IntegerOptionKey const | fast_loops::min_fast_loops ("fast_loops:min_fast_loops") |
| RealOptionKey const | fast_loops::vdw_delta ("fast_loops:vdw_delta") |
| IntegerOptionKey const | fast_loops::give_up ("fast_loops:give_up") |
| RealOptionKey const | fast_loops::chainbreak_max ("fast_loops:chainbreak_max") |
| FileOptionKey const | fast_loops::fragsample_score ("fast_loops:fragsample_score") |
| FileOptionKey const | fast_loops::fragsample_patch ("fast_loops:fragsample_patch") |
| FileOptionKey const | fast_loops::overwrite_filter_scorefxn ("fast_loops:overwrite_filter_scorefxn") |
| FileOptionKey const | fast_loops::patch_filter_scorefxn ("fast_loops:patch_filter_scorefxn") |
| FileOptionKey const | fast_loops::filter_cst_file ("fast_loops:filter_cst_file") |
| RealOptionKey const | fast_loops::filter_cst_weight ("fast_loops:filter_cst_weight") |
| FileOptionKey const | fast_loops::fast_relax_sequence_file ("fast_loops:fast_relax_sequence_file") |
| BooleanOptionKey const | flexpack::flexpack ("flexpack") |
| BooleanOptionKey const | flexpack::annealer::annealer ("flexpack:annealer") |
| RealOptionKey const | flexpack::annealer::inner_iteration_scale ("flexpack:annealer:inner_iteration_scale") |
| RealOptionKey const | flexpack::annealer::outer_iteration_scale ("flexpack:annealer:outer_iteration_scale") |
| RealOptionKey const | flexpack::annealer::fixbb_substitutions_scale ("flexpack:annealer:fixbb_substitutions_scale") |
| RealOptionKey const | flexpack::annealer::pure_movebb_substitutions_scale ("flexpack:annealer:pure_movebb_substitutions_scale") |
| RealOptionKey const | flexpack::annealer::rotsub_movebb_substitutions_scale ("flexpack:annealer:rotsub_movebb_substitutions_scale") |
| BooleanOptionKey const | flexPepDocking::flexPepDocking ("flexPepDocking") |
| StringOptionKey const | flexPepDocking::params_file ("flexPepDocking:params_file") |
| IntegerOptionKey const | flexPepDocking::peptide_anchor ("flexPepDocking:peptide_anchor") |
| StringOptionKey const | flexPepDocking::receptor_chain ("flexPepDocking:receptor_chain") |
| StringOptionKey const | flexPepDocking::peptide_chain ("flexPepDocking:peptide_chain") |
| BooleanOptionKey const | flexPepDocking::pep_fold_only ("flexPepDocking:pep_fold_only") |
| BooleanOptionKey const | flexPepDocking::lowres_abinitio ("flexPepDocking:lowres_abinitio") |
| BooleanOptionKey const | flexPepDocking::lowres_preoptimize ("flexPepDocking:lowres_preoptimize") |
| BooleanOptionKey const | flexPepDocking::flexPepDockingMinimizeOnly ("flexPepDocking:flexPepDockingMinimizeOnly") |
| BooleanOptionKey const | flexPepDocking::extend_peptide ("flexPepDocking:extend_peptide") |
| BooleanOptionKey const | flexPepDocking::place_peptide_on_binding_site ("flexPepDocking:place_peptide_on_binding_site") |
| IntegerOptionKey const | flexPepDocking::sample_pcs ("flexPepDocking:sample_pcs") |
| BooleanOptionKey const | flexPepDocking::SlideIntoContact ("flexPepDocking:SlideIntoContact") |
| BooleanOptionKey const | flexPepDocking::recalculate_foldtree ("flexPepDocking:recalculate_foldtree") |
| BooleanOptionKey const | flexPepDocking::pep_refine ("flexPepDocking:pep_refine") |
| BooleanOptionKey const | flexPepDocking::rbMCM ("flexPepDocking:rbMCM") |
| BooleanOptionKey const | flexPepDocking::torsionsMCM ("flexPepDocking:torsionsMCM") |
| BooleanOptionKey const | flexPepDocking::peptide_loop_model ("flexPepDocking:peptide_loop_model") |
| BooleanOptionKey const | flexPepDocking::backrub_peptide ("flexPepDocking:backrub_peptide") |
| BooleanOptionKey const | flexPepDocking::boost_fa_atr ("flexPepDocking:boost_fa_atr") |
| BooleanOptionKey const | flexPepDocking::ramp_fa_rep ("flexPepDocking:ramp_fa_rep") |
| BooleanOptionKey const | flexPepDocking::ramp_rama ("flexPepDocking:ramp_rama") |
| BooleanOptionKey const | flexPepDocking::flexpep_score_only ("flexPepDocking:flexpep_score_only") |
| FileOptionKey const | flexPepDocking::ref_startstruct ("flexPepDocking:ref_startstruct") |
| BooleanOptionKey const | flexPepDocking::use_cen_score ("flexPepDocking:use_cen_score") |
| BooleanOptionKey const | flexPepDocking::design_peptide ("flexPepDocking:design_peptide") |
| IntegerOptionKey const | flexPepDocking::rep_ramp_cycles ("flexPepDocking:rep_ramp_cycles") |
| IntegerOptionKey const | flexPepDocking::mcm_cycles ("flexPepDocking:mcm_cycles") |
| RealOptionKey const | flexPepDocking::random_phi_psi_preturbation ("flexPepDocking:random_phi_psi_preturbation") |
| RealOptionKey const | flexPepDocking::smove_angle_range ("flexPepDocking:smove_angle_range") |
| BooleanOptionKey const | flexPepDocking::min_receptor_bb ("flexPepDocking:min_receptor_bb") |
| RealOptionKey const | flexPepDocking::random_trans_start ("flexPepDocking:random_trans_start") |
| RealOptionKey const | flexPepDocking::random_rot_start ("flexPepDocking:random_rot_start") |
| BooleanOptionKey const | flexPepDocking::flexpep_prepack ("flexPepDocking:flexpep_prepack") |
| BooleanOptionKey const | flexPepDocking::flexpep_noprepack1 ("flexPepDocking:flexpep_noprepack1") |
| BooleanOptionKey const | flexPepDocking::flexpep_noprepack2 ("flexPepDocking:flexpep_noprepack2") |
| RealOptionKey const | flexPepDocking::score_filter ("flexPepDocking:score_filter") |
| IntegerOptionKey const | flexPepDocking::hb_filter ("flexPepDocking:hb_filter") |
| IntegerOptionKey const | flexPepDocking::hotspot_filter ("flexPepDocking:hotspot_filter") |
| StringOptionKey const | flexPepDocking::frag5 ("flexPepDocking:frag5") |
| RealOptionKey const | flexPepDocking::frag9_weight ("flexPepDocking:frag9_weight") |
| RealOptionKey const | flexPepDocking::frag5_weight ("flexPepDocking:frag5_weight") |
| RealOptionKey const | flexPepDocking::frag3_weight ("flexPepDocking:frag3_weight") |
| BooleanOptionKey const | flexPepDocking::pSer2Asp_centroid ("flexPepDocking:pSer2Asp_centroid") |
| BooleanOptionKey const | flexPepDocking::pSer2Glu_centroid ("flexPepDocking:pSer2Glu_centroid") |
| BooleanOptionKey const | flexPepDocking::dumpPDB_abinitio ("flexPepDocking:dumpPDB_abinitio") |
| BooleanOptionKey const | flexPepDocking::dumpPDB_lowres ("flexPepDocking:dumpPDB_lowres") |
| BooleanOptionKey const | flexPepDocking::dumpPDB_hires ("flexPepDocking:dumpPDB_hires") |
| BooleanOptionKey const | FloppyTail::FloppyTail ("FloppyTail") |
| IntegerOptionKey const | FloppyTail::flexible_start_resnum ("FloppyTail:flexible_start_resnum") |
| IntegerOptionKey const | FloppyTail::flexible_stop_resnum ("FloppyTail:flexible_stop_resnum") |
| StringOptionKey const | FloppyTail::flexible_chain ("FloppyTail:flexible_chain") |
| RealOptionKey const | FloppyTail::shear_on ("FloppyTail:shear_on") |
| BooleanOptionKey const | FloppyTail::pair_off ("FloppyTail:pair_off") |
| BooleanOptionKey const | FloppyTail::publication ("FloppyTail:publication") |
| BooleanOptionKey const | FloppyTail::C_root ("FloppyTail:C_root") |
| BooleanOptionKey const | FloppyTail::COM_root ("FloppyTail:COM_root") |
| BooleanOptionKey const | FloppyTail::force_linear_fold_tree ("FloppyTail:force_linear_fold_tree") |
| BooleanOptionKey const | FloppyTail::debug ("FloppyTail:debug") |
| StringOptionKey const | FloppyTail::cen_weights ("FloppyTail:cen_weights") |
| BooleanOptionKey const | FloppyTail::perturb_show ("FloppyTail:perturb_show") |
| IntegerOptionKey const | FloppyTail::perturb_cycles ("FloppyTail:perturb_cycles") |
| RealOptionKey const | FloppyTail::perturb_temp ("FloppyTail:perturb_temp") |
| IntegerOptionKey const | FloppyTail::refine_cycles ("FloppyTail:refine_cycles") |
| RealOptionKey const | FloppyTail::refine_temp ("FloppyTail:refine_temp") |
| IntegerOptionKey const | FloppyTail::refine_repack_cycles ("FloppyTail:refine_repack_cycles") |
| BooleanOptionKey const | FloppyTail::short_tail::short_tail ("FloppyTail:short_tail") |
| RealOptionKey const | FloppyTail::short_tail::short_tail_fraction ("FloppyTail:short_tail:short_tail_fraction") |
| RealOptionKey const | FloppyTail::short_tail::short_tail_off ("FloppyTail:short_tail:short_tail_off") |
| BooleanOptionKey const | flxbb::flxbb ("flxbb") |
| BooleanOptionKey const | flxbb::view ("flxbb:view") |
| IntegerOptionKey const | flxbb::ncycle ("flxbb:ncycle") |
| RealOptionKey const | flxbb::constraints_sheet ("flxbb:constraints_sheet") |
| BooleanOptionKey const | flxbb::constraints_sheet_include_cacb_pseudotorsion ("flxbb:constraints_sheet_include_cacb_pseudotorsion") |
| RealOptionKey const | flxbb::constraints_NtoC ("flxbb:constraints_NtoC") |
| IntegerOptionKey const | flxbb::filter_trial ("flxbb:filter_trial") |
| StringOptionKey const | flxbb::filter_type ("flxbb:filter_type") |
| FileOptionKey const | flxbb::blueprint ("flxbb:blueprint") |
| BooleanOptionKey const | flxbb::movemap_from_blueprint ("flxbb:movemap_from_blueprint") |
| StringOptionKey const | flxbb::layer::layer ("flxbb:layer") |
| BooleanOptionKey const | fold_and_dock::fold_and_dock ("fold_and_dock") |
| BooleanOptionKey const | fold_and_dock::move_anchor_points ("fold_and_dock:move_anchor_points") |
| BooleanOptionKey const | fold_and_dock::set_anchor_at_closest_point ("fold_and_dock:set_anchor_at_closest_point") |
| BooleanOptionKey const | fold_and_dock::rotate_anchor_to_x ("fold_and_dock:rotate_anchor_to_x") |
| RealOptionKey const | fold_and_dock::trans_mag_smooth ("fold_and_dock:trans_mag_smooth") |
| RealOptionKey const | fold_and_dock::rot_mag_smooth ("fold_and_dock:rot_mag_smooth") |
| RealOptionKey const | fold_and_dock::rb_rot_magnitude ("fold_and_dock:rb_rot_magnitude") |
| RealOptionKey const | fold_and_dock::rb_trans_magnitude ("fold_and_dock:rb_trans_magnitude") |
| IntegerOptionKey const | fold_and_dock::rigid_body_cycles ("fold_and_dock:rigid_body_cycles") |
| RealOptionKey const | fold_and_dock::move_anchor_frequency ("fold_and_dock:move_anchor_frequency") |
| RealOptionKey const | fold_and_dock::rigid_body_frequency ("fold_and_dock:rigid_body_frequency") |
| BooleanOptionKey const | fold_and_dock::rigid_body_disable_mc ("fold_and_dock:rigid_body_disable_mc") |
| RealOptionKey const | fold_and_dock::slide_contact_frequency ("fold_and_dock:slide_contact_frequency") |
| BooleanOptionKey const | fold_cst::fold_cst ("fold_cst") |
| RealOptionKey const | fold_cst::constraint_skip_rate ("fold_cst:constraint_skip_rate") |
| IntegerOptionKey const | fold_cst::violation_skip_basis ("fold_cst:violation_skip_basis") |
| IntegerOptionKey const | fold_cst::violation_skip_ignore ("fold_cst:violation_skip_ignore") |
| BooleanOptionKey const | fold_cst::keep_skipped_csts ("fold_cst:keep_skipped_csts") |
| BooleanOptionKey const | fold_cst::no_minimize ("fold_cst:no_minimize") |
| BooleanOptionKey const | fold_cst::force_minimize ("fold_cst:force_minimize") |
| RealVectorOptionKey const | fold_cst::seq_sep_stages ("fold_cst:seq_sep_stages") |
| IntegerOptionKey const | fold_cst::reramp_cst_cycles ("fold_cst:reramp_cst_cycles") |
| RealOptionKey const | fold_cst::reramp_start_cstweight ("fold_cst:reramp_start_cstweight") |
| IntegerOptionKey const | fold_cst::reramp_iterations ("fold_cst:reramp_iterations") |
| BooleanOptionKey const | fold_cst::skip_on_noviolation_in_stage1 ("fold_cst:skip_on_noviolation_in_stage1") |
| RealOptionKey const | fold_cst::stage1_ramp_cst_cycle_factor ("fold_cst:stage1_ramp_cst_cycle_factor") |
| RealOptionKey const | fold_cst::stage2_constraint_threshold ("fold_cst:stage2_constraint_threshold") |
| BooleanOptionKey const | fold_cst::ignore_sequence_seperation ("fold_cst:ignore_sequence_seperation") |
| BooleanOptionKey const | fold_cst::no_recover_low_at_constraint_switch ("fold_cst:no_recover_low_at_constraint_switch") |
| BooleanOptionKey const | fold_cst::ramp_coord_cst ("fold_cst:ramp_coord_cst") |
| BooleanOptionKey const | fold_from_loops::fold_from_loops ("fold_from_loops") |
1.9.1