|
| | test.Workshop8test.extra_options |
| |
| | test.Workshop8test.pose = pose_from_file("../test/data/test_in.pdb") |
| |
| | test.Workshop8test.ft = FoldTree() |
| |
| | test.Workshop8test.pmm = PyMOLMover() |
| |
| | test.Workshop8test.movemap = MoveMap() |
| |
| | test.Workshop8test.loop1 = protocols.loops.Loop(15, 24, 19) |
| |
| | test.Workshop8test.ccd = protocols.loops.loop_closure.ccd.CCDLoopClosureMover(loop1, movemap) |
| |
| | test.Workshop8test.loop2 = protocols.loops.Loop(78, 83, 80) |
| |
| | test.Workshop8test.loops = protocols.loops.Loops() |
| |
| | test.Workshop8test.reference_pose = pose_from_file("../test/data/test_in.pdb") |
| |
| | test.Workshop8test.score = get_score_function() |
| |
| | test.Workshop8test.output = tempfile.mkstemp()[1] |
| |
| | test.Workshop8test.jd = PyJobDistributor(output, 1, score) |
| |
| | test.Workshop8test.lrms = loop_rmsd(pose, reference_pose, loops, True) |
| |
| | test.Workshop8test.additional_decoy_info |
| |
| | test.Workshop8test.loop_refine = LoopMover_Refine_CCD(loops) |
| |
| | test.Workshop8test.sw_low = SwitchResidueTypeSetMover("centroid") |
| |
| | test.Workshop8test.kic_perturb = protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC(loops) |
| |
| | test.Workshop8test.sw_high = SwitchResidueTypeSetMover("fa_standard") |
| |
| | test.Workshop8test.kic_refine = protocols.loops.loop_mover.refine.LoopMover_Refine_KIC(loops) |
| |
| | test.Workshop8test.kic_mover = KinematicMover() |
| |
