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Rosetta
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Functions | |
| RealOptionKey const | score::facts_saltbridge_correction ("score:facts_saltbridge_correction") |
| RealVectorOptionKey const | score::facts_dshift ("score:facts_dshift") |
| RealOptionKey const | score::facts_die ("score:facts_die") |
| BooleanOptionKey const | score::facts_binding_affinity ("score:facts_binding_affinity") |
| BooleanOptionKey const | score::facts_intrascale_by_level ("score:facts_intrascale_by_level") |
| RealVectorOptionKey const | score::facts_intbb_elec_scale ("score:facts_intbb_elec_scale") |
| RealVectorOptionKey const | score::facts_intbb_solv_scale ("score:facts_intbb_solv_scale") |
| RealVectorOptionKey const | score::facts_adjbb_elec_scale ("score:facts_adjbb_elec_scale") |
| RealVectorOptionKey const | score::facts_adjbb_solv_scale ("score:facts_adjbb_solv_scale") |
| RealVectorOptionKey const | score::facts_intbs_elec_scale ("score:facts_intbs_elec_scale") |
| RealVectorOptionKey const | score::facts_intbs_solv_scale ("score:facts_intbs_solv_scale") |
| RealVectorOptionKey const | score::facts_adjbs_elec_scale ("score:facts_adjbs_elec_scale") |
| RealVectorOptionKey const | score::facts_adjbs_solv_scale ("score:facts_adjbs_solv_scale") |
| RealVectorOptionKey const | score::facts_intsc_elec_scale ("score:facts_intsc_elec_scale") |
| RealVectorOptionKey const | score::facts_intsc_solv_scale ("score:facts_intsc_solv_scale") |
| StringOptionKey const | score::facts_charge_dir ("score:facts_charge_dir") |
| StringOptionKey const | score::facts_eff_charge_dir ("score:facts_eff_charge_dir") |
| StringVectorOptionKey const | score::facts_plane_aa ("score:facts_plane_aa") |
| StringOptionKey const | score::facts_eq_type ("score:facts_eq_type") |
| IntegerOptionKey const | score::ignore_terminal_ss_elements ("score:ignore_terminal_ss_elements") |
| BooleanOptionKey const | score::length_dep_srbb ("score:length_dep_srbb") |
| RealOptionKey const | score::ldsrbb_low_scale ("score:ldsrbb_low_scale") |
| RealOptionKey const | score::ldsrbb_high_scale ("score:ldsrbb_high_scale") |
| IntegerOptionKey const | score::ldsrbb_minlength ("score:ldsrbb_minlength") |
| IntegerOptionKey const | score::ldsrbb_maxlength ("score:ldsrbb_maxlength") |
| RealOptionKey const | score::max_motif_per_res ("score:max_motif_per_res") |
| IntegerOptionKey const | score::max_contacting_ss ("score:max_contacting_ss") |
| BooleanOptionKey const | score::motif_ignore_symmmetry ("score:motif_ignore_symmmetry") |
| IntegerVectorOptionKey const | score::motif_residues ("score:motif_residues") |
| StringVectorOptionKey const | score::netcharge_setup_file ("score:netcharge_setup_file") |
| StringVectorOptionKey const | score::mhc_epitope_setup_file ("score:mhc_epitope_setup_file") |
| RealOptionKey const | score::ms_dist_midpoint ("score:ms_dist_midpoint") |
| RealOptionKey const | score::ms_dist_exponent ("score:ms_dist_exponent") |
| RealOptionKey const | score::ms_fit_slope ("score:ms_fit_slope") |
| RealOptionKey const | score::ms_fit_intercept ("score:ms_fit_intercept") |
| RealOptionKey const | score::ms_fade_outer ("score:ms_fade_outer") |
| RealOptionKey const | score::ms_fade_dist ("score:ms_fade_dist") |
| RealOptionKey const | score::ccs_exp ("score:ccs_exp") |
| RealOptionKey const | score::ccs_prad ("score:ccs_prad") |
| IntegerOptionKey const | score::ccs_nrots ("score:ccs_nrots") |
| StringOptionKey const | score::nmer_ref_energies ("score:nmer_ref_energies") |
| StringOptionKey const | score::nmer_ref_energies_list ("score:nmer_ref_energies_list") |
| StringOptionKey const | score::nmer_pssm ("score:nmer_pssm") |
| StringOptionKey const | score::nmer_pssm_list ("score:nmer_pssm_list") |
| RealOptionKey const | score::nmer_pssm_scorecut ("score:nmer_pssm_scorecut") |
| StringOptionKey const | score::nmer_svm ("score:nmer_svm") |
| StringOptionKey const | score::nmer_svm_list ("score:nmer_svm_list") |
| StringOptionKey const | score::nmer_svm_rank ("score:nmer_svm_rank") |
| StringOptionKey const | score::nmer_svm_rank_list ("score:nmer_svm_rank_list") |
| RealOptionKey const | score::nmer_svm_scorecut ("score:nmer_svm_scorecut") |
| StringOptionKey const | score::nmer_svm_aa_matrix ("score:nmer_svm_aa_matrix") |
| IntegerOptionKey const | score::nmer_svm_term_length ("score:nmer_svm_term_length") |
| BooleanOptionKey const | score::nmer_svm_pssm_feat ("score:nmer_svm_pssm_feat") |
| BooleanOptionKey const | score::nmer_svm_avg_rank_as_energy ("score:nmer_svm_avg_rank_as_energy") |
| IntegerOptionKey const | score::nmer_ref_seq_length ("score:nmer_ref_seq_length") |
| BooleanOptionKey const | score::just_calc_rmsd ("score:just_calc_rmsd") |
| BooleanOptionKey const | score::envsmooth_zero_negatives ("score:envsmooth_zero_negatives") |
| RealOptionKey const | score::rama_power ("score:rama_power") |
| BooleanOptionKey const | score::ideal_sugars ("score:ideal_sugars") |
| RealOptionKey const | score::hbond_fade ("score:hbond_fade") |
| BooleanOptionKey const | score::hbond_new_sp3_acc ("score:hbond_new_sp3_acc") |
| RealOptionKey const | score::alignment_sharpness ("score:alignment_sharpness") |
| StringOptionKey const | score::rna_torsion_potential ("score:rna_torsion_potential") |
| BooleanOptionKey const | score::arg_cation_pi_his_can_be_pi ("score:arg_cation_pi_his_can_be_pi") |
| BooleanOptionKey const | score::mc_optimize_dG ("score:mc_optimize_dG") |
| RealOptionKey const | score::mc_interface_weight ("score:mc_interface_weight") |
| RealOptionKey const | score::mc_total_weight ("score:mc_total_weight") |
| BooleanOptionKey const | score::force_sugar_bb_zero ("score:force_sugar_bb_zero") |
| IntegerOptionKey const | score::voids_penalty_energy_containing_cones_cutoff ("score:voids_penalty_energy_containing_cones_cutoff") |
| RealOptionKey const | score::voids_penalty_energy_cone_dotproduct_cutoff ("score:voids_penalty_energy_cone_dotproduct_cutoff") |
| RealOptionKey const | score::voids_penalty_energy_cone_distance_cutoff ("score:voids_penalty_energy_cone_distance_cutoff") |
| BooleanOptionKey const | score::voids_penalty_energy_disabled_except_during_packing ("score:voids_penalty_energy_disabled_except_during_packing") |
| RealOptionKey const | score::voids_penalty_energy_voxel_size ("score:voids_penalty_energy_voxel_size") |
| RealOptionKey const | score::voids_penalty_energy_voxel_grid_padding ("score:voids_penalty_energy_voxel_grid_padding") |
| BooleanOptionKey const | score::rna::rna ("score:rna") |
| StringOptionKey const | score::rna::rna_base_pair_xy_filename ("score:rna:rna_base_pair_xy_filename") |
| BooleanOptionKey const | score::rna::disable_orientation_dependent_rna_ch_o_bonds ("score:rna:disable_orientation_dependent_rna_ch_o_bonds") |
| StringOptionKey const | score::rna::rna_suite_potential ("score:rna:rna_suite_potential") |
| StringOptionKey const | score::rna::suiteness_bonus ("score:rna:suiteness_bonus") |
| BooleanOptionKey const | score::rna::rna_torsion_skip_chainbreak ("score:rna:rna_torsion_skip_chainbreak") |
| BooleanOptionKey const | score::rna::rna_chemical_shift_verbose ("score:rna:rna_chemical_shift_verbose") |
| BooleanOptionKey const | score::rna::rna_chemical_shift_larmord ("score:rna:rna_chemical_shift_larmord") |
| StringOptionKey const | score::rna::rna_chemical_shift_exp_data ("score:rna:rna_chemical_shift_exp_data") |
| StringOptionKey const | score::rna::rna_chemical_shift_larmord_par ("score:rna:rna_chemical_shift_larmord_par") |
| StringOptionKey const | score::rna::rna_chemical_shift_larmord_wt ("score:rna:rna_chemical_shift_larmord_wt") |
| StringOptionKey const | score::rna::rna_chemical_shift_larmord_ref ("score:rna:rna_chemical_shift_larmord_ref") |
| StringOptionKey const | score::rna::rna_chemical_shift_larmord_nei ("score:rna:rna_chemical_shift_larmord_nei") |
| RealOptionKey const | score::rna::rna_chemical_shift_larmord_cut ("score:rna:rna_chemical_shift_larmord_cut") |
| RealOptionKey const | score::rna::rna_chemical_shift_larmord_beta ("score:rna:rna_chemical_shift_larmord_beta") |
| StringOptionKey const | score::rna::rna_chemical_shift_H5_prime_mode ("score:rna:rna_chemical_shift_H5_prime_mode") |
| IntegerVectorOptionKey const | score::rna::rna_chemical_shift_include_res ("score:rna:rna_chemical_shift_include_res") |
| BooleanOptionKey const | score::rna::DMS_separate_features ("score:rna:DMS_separate_features") |
| BooleanOptionKey const | score::rna::DMS_careful_base_pair_classifier ("score:rna:DMS_careful_base_pair_classifier") |
| RealOptionKey const | score::rna::rna_chem_map_lores_weight ("score:rna:rna_chem_map_lores_weight") |
| BooleanOptionKey const | score::rna::use_2prime_OH_potential ("score:rna:use_2prime_OH_potential") |
| BooleanOptionKey const | score::rna::use_rna_chi_potential ("score:rna:use_rna_chi_potential") |
| BooleanOptionKey const | score::rna::include_neighbor_base_stacks ("score:rna:include_neighbor_base_stacks") |
| BooleanOptionKey const | score::rna::FA_low_res_rnp_scoring ("score:rna:FA_low_res_rnp_scoring") |
| RealOptionKey const | score::rna::free_suite_bonus ("score:rna:free_suite_bonus") |
| RealOptionKey const | score::rna::free_sugar_bonus ("score:rna:free_sugar_bonus") |
| RealOptionKey const | score::rna::free_2HOprime_bonus ("score:rna:free_2HOprime_bonus") |
| RealOptionKey const | score::rna::syn_G_potential_bonus ("score:rna:syn_G_potential_bonus") |
| BooleanOptionKey const | score::rna::rna_bulge_bonus_once_per_loop ("score:rna:rna_bulge_bonus_once_per_loop") |
| RealOptionKey const | score::rna::pack_phosphate_penalty ("score:rna:pack_phosphate_penalty") |
| BooleanOptionKey const | score::saxs::saxs ("score:saxs") |
| RealOptionKey const | score::saxs::min_score ("score:saxs:min_score") |
| StringOptionKey const | score::saxs::custom_ff ("score:saxs:custom_ff") |
| StringOptionKey const | score::saxs::print_i_calc ("score:saxs:print_i_calc") |
| FileOptionKey const | score::saxs::ref_fa_spectrum ("score:saxs:ref_fa_spectrum") |
| FileOptionKey const | score::saxs::ref_cen_spectrum ("score:saxs:ref_cen_spectrum") |
| FileOptionKey const | score::saxs::ref_spectrum ("score:saxs:ref_spectrum") |
| FileOptionKey const | score::saxs::ref_pddf ("score:saxs:ref_pddf") |
| RealOptionKey const | score::saxs::d_min ("score:saxs:d_min") |
| RealOptionKey const | score::saxs::d_max ("score:saxs:d_max") |
| RealOptionKey const | score::saxs::d_step ("score:saxs:d_step") |
| RealOptionKey const | score::saxs::q_min ("score:saxs:q_min") |
| RealOptionKey const | score::saxs::q_max ("score:saxs:q_max") |
| RealOptionKey const | score::saxs::q_step ("score:saxs:q_step") |
| BooleanOptionKey const | score::saxs::fit_pddf_area ("score:saxs:fit_pddf_area") |
| BooleanOptionKey const | score::fiber_diffraction::fiber_diffraction ("score:fiber_diffraction") |
| FileOptionKey const | score::fiber_diffraction::layer_lines ("score:fiber_diffraction:layer_lines") |
| RealOptionKey const | score::fiber_diffraction::a ("score:fiber_diffraction:a") |
| RealOptionKey const | score::fiber_diffraction::b ("score:fiber_diffraction:b") |
| RealOptionKey const | score::fiber_diffraction::p ("score:fiber_diffraction:p") |
| RealOptionKey const | score::fiber_diffraction::radius ("score:fiber_diffraction:radius") |
| RealOptionKey const | score::fiber_diffraction::resolution_cutoff_low ("score:fiber_diffraction:resolution_cutoff_low") |
| RealOptionKey const | score::fiber_diffraction::resolution_cutoff_high ("score:fiber_diffraction:resolution_cutoff_high") |
| IntegerOptionKey const | score::fiber_diffraction::max_bessel_order ("score:fiber_diffraction:max_bessel_order") |
| IntegerOptionKey const | score::fiber_diffraction::cn_symmetry ("score:fiber_diffraction:cn_symmetry") |
| RealOptionKey const | score::fiber_diffraction::b_factor ("score:fiber_diffraction:b_factor") |
| RealOptionKey const | score::fiber_diffraction::b_factor_solv ("score:fiber_diffraction:b_factor_solv") |
| RealOptionKey const | score::fiber_diffraction::b_factor_solv_K ("score:fiber_diffraction:b_factor_solv_K") |
| RealOptionKey const | score::fiber_diffraction::grid_reso ("score:fiber_diffraction:grid_reso") |
| IntegerOptionKey const | score::fiber_diffraction::grid_r ("score:fiber_diffraction:grid_r") |
| IntegerOptionKey const | score::fiber_diffraction::grid_phi ("score:fiber_diffraction:grid_phi") |
| IntegerOptionKey const | score::fiber_diffraction::grid_z ("score:fiber_diffraction:grid_z") |
| RealOptionKey const | score::fiber_diffraction::qfht_K1 ("score:fiber_diffraction:qfht_K1") |
| RealOptionKey const | score::fiber_diffraction::qfht_K2 ("score:fiber_diffraction:qfht_K2") |
| IntegerOptionKey const | score::fiber_diffraction::chi_iterations ("score:fiber_diffraction:chi_iterations") |
| BooleanOptionKey const | score::fiber_diffraction::rfactor_refinement ("score:fiber_diffraction:rfactor_refinement") |
| BooleanOptionKey const | score::fiber_diffraction::output_fiber_spectra ("score:fiber_diffraction:output_fiber_spectra") |
| IntegerOptionKey const | score::fiber_diffraction::gpu_processor ("score:fiber_diffraction:gpu_processor") |
| RealOptionKey const | score::fiber_diffraction::centroid_density_mass ("score:fiber_diffraction:centroid_density_mass") |
| BooleanOptionKey const | score::occ_sol_fitted::occ_sol_fitted ("score:occ_sol_fitted") |
| RealOptionKey const | score::occ_sol_fitted::Ntrp_amp_scaling ("score:occ_sol_fitted:Ntrp_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::NH2O_amp_scaling ("score:occ_sol_fitted:NH2O_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Nlys_amp_scaling ("score:occ_sol_fitted:Nlys_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Narg_amp_scaling ("score:occ_sol_fitted:Narg_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Nbb_amp_scaling ("score:occ_sol_fitted:Nbb_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Nhis_amp_scaling ("score:occ_sol_fitted:Nhis_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OH_amp_scaling ("score:occ_sol_fitted:OH_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::ONH2_amp_scaling ("score:occ_sol_fitted:ONH2_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OOC_amp_scaling ("score:occ_sol_fitted:OOC_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Oaro_amp_scaling ("score:occ_sol_fitted:Oaro_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Oet2_amp_scaling ("score:occ_sol_fitted:Oet2_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Oet3_amp_scaling ("score:occ_sol_fitted:Oet3_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OCbb_amp_scaling ("score:occ_sol_fitted:OCbb_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::HOH_amp_scaling ("score:occ_sol_fitted:HOH_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OPha_amp_scaling ("score:occ_sol_fitted:OPha_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OHha_amp_scaling ("score:occ_sol_fitted:OHha_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OC3_amp_scaling ("score:occ_sol_fitted:OC3_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::OSi_amp_scaling ("score:occ_sol_fitted:OSi_amp_scaling") |
| RealOptionKey const | score::occ_sol_fitted::Oice_amp_scaling ("score:occ_sol_fitted:Oice_amp_scaling") |
| BooleanOptionKey const | score::loop_close::loop_close ("score:loop_close") |
| RealOptionKey const | score::loop_close::loop_fixed_cost ("score:loop_close:loop_fixed_cost") |
| BooleanOptionKey const | score::loop_close::allow_complex_loop_graph ("score:loop_close:allow_complex_loop_graph") |
| BooleanOptionKey const | score::loop_close::use_6D_potential ("score:loop_close:use_6D_potential") |
| StringOptionKey const | score::loop_close::force_6D_potential_file ("score:loop_close:force_6D_potential_file") |
| BooleanOptionKey const | score::loop_close::use_cubic_interp ("score:loop_close:use_cubic_interp") |
| BooleanOptionKey const | multithreading::multithreading ("multithreading") |
| IntegerOptionKey const | multithreading::total_threads ("multithreading:total_threads") |
| IntegerOptionKey const | multithreading::interaction_graph_threads ("multithreading:interaction_graph_threads") |
| BooleanOptionKey const | recon::recon ("recon") |
| BooleanOptionKey const | recon::randomize ("recon:randomize") |
| BooleanOptionKey const | packing::packing ("packing") |
| BooleanOptionKey const | packing::repack_only ("packing:repack_only") |
| BooleanOptionKey const | packing::prevent_repacking ("packing:prevent_repacking") |
| RealOptionKey const | packing::cenrot_cutoff ("packing:cenrot_cutoff") |
| BooleanOptionKey const | packing::ignore_ligand_chi ("packing:ignore_ligand_chi") |
| BooleanOptionKey const | packing::quasisymmetry ("packing:quasisymmetry") |
| IntegerOptionKey const | packing::ndruns ("packing:ndruns") |
| BooleanOptionKey const | packing::soft_rep_design ("packing:soft_rep_design") |
| RealOptionKey const | packing::mainchain_h_rebuild_threshold ("packing:mainchain_h_rebuild_threshold") |
| BooleanOptionKey const | packing::use_electrostatic_repulsion ("packing:use_electrostatic_repulsion") |
| BooleanOptionKey const | packing::dump_rotamer_sets ("packing:dump_rotamer_sets") |
| RealOptionKey const | packing::dunbrack_prob_buried ("packing:dunbrack_prob_buried") |
| RealOptionKey const | packing::dunbrack_prob_nonburied ("packing:dunbrack_prob_nonburied") |
| RealOptionKey const | packing::dunbrack_prob_buried_semi ("packing:dunbrack_prob_buried_semi") |
| RealOptionKey const | packing::dunbrack_prob_nonburied_semi ("packing:dunbrack_prob_nonburied_semi") |
| BooleanOptionKey const | packing::no_optH ("packing:no_optH") |
| BooleanOptionKey const | packing::optH_MCA ("packing:optH_MCA") |
| BooleanOptionKey const | packing::pack_missing_sidechains ("packing:pack_missing_sidechains") |
| BooleanOptionKey const | packing::preserve_c_beta ("packing:preserve_c_beta") |
| BooleanOptionKey const | packing::flip_HNQ ("packing:flip_HNQ") |
| IntegerVectorOptionKey const | packing::fix_his_tautomer ("packing:fix_his_tautomer") |
| BooleanOptionKey const | packing::print_pymol_selection ("packing:print_pymol_selection") |
| IntegerOptionKey const | packing::extrachi_cutoff ("packing:extrachi_cutoff") |
| FileVectorOptionKey const | packing::resfile ("packing:resfile") |
| BooleanOptionKey const | packing::sc_branch_rotamers ("packing:sc_branch_rotamers") |
| RealOptionKey const | packing::outeriterations_scaling ("packing:outeriterations_scaling") |
| RealOptionKey const | packing::inneriterations_scaling ("packing:inneriterations_scaling") |
| StringVectorOptionKey const | packing::adducts ("packing:adducts") |
| BooleanOptionKey const | packing::use_input_sc ("packing:use_input_sc") |
| FileVectorOptionKey const | packing::unboundrot ("packing:unboundrot") |
| RealOptionKey const | packing::max_rotbump_energy ("packing:max_rotbump_energy") |
| BooleanOptionKey const | packing::lazy_ig ("packing:lazy_ig") |
| BooleanOptionKey const | packing::double_lazy_ig ("packing:double_lazy_ig") |
| IntegerOptionKey const | packing::linmem_ig ("packing:linmem_ig") |
| BooleanOptionKey const | packing::precompute_ig ("packing:precompute_ig") |
| IntegerOptionKey const | packing::multi_cool_annealer ("packing:multi_cool_annealer") |
| BooleanOptionKey const | packing::sequence_symmetric_annealer ("packing:sequence_symmetric_annealer") |
| BooleanOptionKey const | packing::smart_annealer ("packing:smart_annealer") |
| StringOptionKey const | packing::smart_annealer_model ("packing:smart_annealer_model") |
| RealOptionKey const | packing::smart_annealer_cutoff ("packing:smart_annealer_cutoff") |
| BooleanOptionKey const | packing::smart_annealer_pick_again ("packing:smart_annealer_pick_again") |
| BooleanOptionKey const | packing::smart_annealer_disable_during_quench ("packing:smart_annealer_disable_during_quench") |
| RealVectorOptionKey const | packing::minpack_temp_schedule ("packing:minpack_temp_schedule") |
| IntegerOptionKey const | packing::minpack_inner_iteration_scale ("packing:minpack_inner_iteration_scale") |
| BooleanOptionKey const | packing::minpack_disable_bumpcheck ("packing:minpack_disable_bumpcheck") |
| BooleanOptionKey const | packing::ex1::ex1 ("packing:ex1") |
| IntegerOptionKey const | packing::ex1::level ("packing:ex1:level") |
| BooleanOptionKey const | packing::ex1::operate ("packing:ex1:operate") |
| BooleanOptionKey const | packing::ex2::ex2 ("packing:ex2") |
| IntegerOptionKey const | packing::ex2::level ("packing:ex2:level") |
| BooleanOptionKey const | packing::ex2::operate ("packing:ex2:operate") |
| BooleanOptionKey const | packing::ex3::ex3 ("packing:ex3") |
| IntegerOptionKey const | packing::ex3::level ("packing:ex3:level") |
| BooleanOptionKey const | packing::ex3::operate ("packing:ex3:operate") |
| BooleanOptionKey const | packing::ex4::ex4 ("packing:ex4") |
| IntegerOptionKey const | packing::ex4::level ("packing:ex4:level") |
| BooleanOptionKey const | packing::ex4::operate ("packing:ex4:operate") |
| BooleanOptionKey const | packing::ex1aro::ex1aro ("packing:ex1aro") |
| IntegerOptionKey const | packing::ex1aro::level ("packing:ex1aro:level") |
| BooleanOptionKey const | packing::ex2aro::ex2aro ("packing:ex2aro") |
| IntegerOptionKey const | packing::ex2aro::level ("packing:ex2aro:level") |
| BooleanOptionKey const | packing::ex1aro_exposed::ex1aro_exposed ("packing:ex1aro_exposed") |
| IntegerOptionKey const | packing::ex1aro_exposed::level ("packing:ex1aro_exposed:level") |
| BooleanOptionKey const | packing::ex2aro_exposed::ex2aro_exposed ("packing:ex2aro_exposed") |
| IntegerOptionKey const | packing::ex2aro_exposed::level ("packing:ex2aro_exposed:level") |
| BooleanOptionKey const | packing::exdna::exdna ("packing:exdna") |
| IntegerOptionKey const | packing::exdna::level ("packing:exdna:level") |
| BooleanOptionKey const | packing::packer_palette::packer_palette ("packing:packer_palette") |
| FileOptionKey const | packing::packer_palette::extra_base_type_file ("packing:packer_palette:extra_base_type_file") |
| BooleanOptionKey const | packing::packer_palette::NCAA_expanded ("packing:packer_palette:NCAA_expanded") |
| BooleanOptionKey const | archive::archive ("archive") |
| BooleanOptionKey const | archive::reread_all_structures ("archive:reread_all_structures") |
| IntegerOptionKey const | archive::completion_notify_frequency ("archive:completion_notify_frequency") |
| BooleanOptionKey const | carbohydrates::carbohydrates ("carbohydrates") |
| BooleanOptionKey const | carbohydrates::glycam_pdb_format ("carbohydrates:glycam_pdb_format") |
| StringOptionKey const | carbohydrates::linkage_conformer_data_file ("carbohydrates:linkage_conformer_data_file") |
| StringOptionKey const | carbohydrates::saccharide_sequence ("carbohydrates:saccharide_sequence") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::glycopeptide_docking ("carbohydrates:glycopeptide_docking") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::residue_to_glycosylate ("carbohydrates:glycopeptide_docking:residue_to_glycosylate") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::anchor_residue ("carbohydrates:glycopeptide_docking:anchor_residue") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::low_res ("carbohydrates:glycopeptide_docking:low_res") |
| IntegerOptionKey const | carbohydrates::glycopeptide_docking::high_res_outer_cycles ("carbohydrates:glycopeptide_docking:high_res_outer_cycles") |
| IntegerOptionKey const | carbohydrates::glycopeptide_docking::low_res_outer_cycles ("carbohydrates:glycopeptide_docking:low_res_outer_cycles") |
| IntegerOptionKey const | carbohydrates::glycopeptide_docking::low_res_inner_cycles ("carbohydrates:glycopeptide_docking:low_res_inner_cycles") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::high_res ("carbohydrates:glycopeptide_docking:high_res") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::substrate_type ("carbohydrates:glycopeptide_docking:substrate_type") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::tree_type ("carbohydrates:glycopeptide_docking:tree_type") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::randomize_substrate_torsions ("carbohydrates:glycopeptide_docking:randomize_substrate_torsions") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::enable_backbone_moves_pp ("carbohydrates:glycopeptide_docking:enable_backbone_moves_pp") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::prevent_anchor_repacking ("carbohydrates:glycopeptide_docking:prevent_anchor_repacking") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::sugardonor_residue ("carbohydrates:glycopeptide_docking:sugardonor_residue") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::output_debug_pdbs ("carbohydrates:glycopeptide_docking:output_debug_pdbs") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::fix_weights ("carbohydrates:glycopeptide_docking:fix_weights") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::nevery_interface ("carbohydrates:glycopeptide_docking:nevery_interface") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::ntotal_backbone ("carbohydrates:glycopeptide_docking:ntotal_backbone") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::allow_glycan_torsion_moves ("carbohydrates:glycopeptide_docking:allow_glycan_torsion_moves") |
| RealOptionKey const | carbohydrates::glycopeptide_docking::interface_distance ("carbohydrates:glycopeptide_docking:interface_distance") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::score_only ("carbohydrates:glycopeptide_docking:score_only") |
| BooleanOptionKey const | carbohydrates::glycopeptide_docking::output_distance_metrics ("carbohydrates:glycopeptide_docking:output_distance_metrics") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::preglycosylate_residues ("carbohydrates:glycopeptide_docking:preglycosylate_residues") |
| StringOptionKey const | carbohydrates::glycopeptide_docking::preglycosylate_sugar_names ("carbohydrates:glycopeptide_docking:preglycosylate_sugar_names") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::glycan_sampler ("carbohydrates:glycan_sampler") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::glycan_sampler_test ("carbohydrates:glycan_sampler:glycan_sampler_test") |
| IntegerOptionKey const | carbohydrates::glycan_sampler::glycan_sampler_rounds ("carbohydrates:glycan_sampler:glycan_sampler_rounds") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::min_rings ("carbohydrates:glycan_sampler:min_rings") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::final_min_glycans ("carbohydrates:glycan_sampler:final_min_glycans") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::glycan_sampler_movie ("carbohydrates:glycan_sampler:glycan_sampler_movie") |
| RealOptionKey const | carbohydrates::glycan_sampler::glycan_sampler_kt ("carbohydrates:glycan_sampler:glycan_sampler_kt") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::glycan_sampler_refine ("carbohydrates:glycan_sampler:glycan_sampler_refine") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::cartmin ("carbohydrates:glycan_sampler:cartmin") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::tree_based_min_pack ("carbohydrates:glycan_sampler:tree_based_min_pack") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::population_based_conformer_sampling ("carbohydrates:glycan_sampler:population_based_conformer_sampling") |
| BooleanOptionKey const | carbohydrates::glycan_sampler::use_gaussian_sampling ("carbohydrates:glycan_sampler:use_gaussian_sampling") |
| BooleanOptionKey const | carbohydrates::glycan_dock::glycan_dock ("carbohydrates:glycan_dock") |
| IntegerOptionKey const | carbohydrates::glycan_dock::n_repeats ("carbohydrates:glycan_dock:n_repeats") |
| BooleanOptionKey const | carbohydrates::glycan_dock::refine_only ("carbohydrates:glycan_dock:refine_only") |
| BooleanOptionKey const | carbohydrates::glycan_dock::prepack_only ("carbohydrates:glycan_dock:prepack_only") |
| BooleanOptionKey const | carbohydrates::glycan_dock::rand_glycan_jump_res ("carbohydrates:glycan_dock:rand_glycan_jump_res") |
| BooleanOptionKey const | carbohydrates::glycan_dock::stage1_rotate_glycan_about_com ("carbohydrates:glycan_dock:stage1_rotate_glycan_about_com") |
1.9.1