legacy_sewing.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::legacy_sewing

Variables
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::legacy_sewing
FileOptionKey const	basic::options::OptionKeys::legacy_sewing::model_file_name
FileOptionKey const	basic::options::OptionKeys::legacy_sewing::score_file_name
FileOptionKey const	basic::options::OptionKeys::legacy_sewing::new_model_file_name
StringOptionKey const	basic::options::OptionKeys::legacy_sewing::remove_any_dssp
StringOptionKey const	basic::options::OptionKeys::legacy_sewing::remove_all_dssp
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::min_helix_length
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_helix_length
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::min_loop_length
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_loop_length
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::min_strand_length
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_strand_length
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_models_by_ss_num
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::model_should_have_this_num_of_ss
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_E_at_terminal_segment
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_E
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_H
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_models_with_E_terminal_ss
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_models_with_H_terminal_ss
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_antiparallel_way_H_bonded_models_by_terminal_strands
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_parallel_way_H_bonded_models_by_terminal_strands
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_certain_model_ids
StringOptionKey const	basic::options::OptionKeys::legacy_sewing::leave_these_model_ids
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::box_length
StringOptionKey const	basic::options::OptionKeys::legacy_sewing::mode
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::disregard_num_segment_matches
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::do_not_remove_connection_inconsistencies
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::score_between_opposite_terminal_segments
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::num_models_to_dump
IntegerVectorOptionKey const	basic::options::OptionKeys::legacy_sewing::models_to_dump
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::min_hash_score
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_clash_score
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::num_segments_to_match
IntegerVectorOptionKey const	basic::options::OptionKeys::legacy_sewing::match_segments
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_models
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::starting_model
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::num_procs
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::rank
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::hash_tag_only_terminal_Es
StringOptionKey const	basic::options::OptionKeys::legacy_sewing::assembly_type
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::num_edges_to_follow
RealOptionKey const	basic::options::OptionKeys::legacy_sewing::base_native_bonus
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::neighbor_cutoff
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::dump_pdbs
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::skip_refinement
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::skip_filters
RealOptionKey const	basic::options::OptionKeys::legacy_sewing::min_motif_score
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::may_add_already_added_model
RealOptionKey const	basic::options::OptionKeys::legacy_sewing::offset_bump_dsq
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::num_repeats
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::repeat
IntegerVectorOptionKey const	basic::options::OptionKeys::legacy_sewing::pose_segment_starts
IntegerVectorOptionKey const	basic::options::OptionKeys::legacy_sewing::pose_segment_ends
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::keep_source_segments
FileOptionKey const	basic::options::OptionKeys::legacy_sewing::partner_pdb
IntegerVectorOptionKey const	basic::options::OptionKeys::legacy_sewing::keep_model_residues
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::output_alignments_to_file
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::min_lh_fragments
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::skip_loop_generation
RealOptionKey const	basic::options::OptionKeys::legacy_sewing::calcium_motif_score_weight
IntegerOptionKey const	basic::options::OptionKeys::legacy_sewing::max_ss_num
BooleanOptionKey const	basic::options::OptionKeys::legacy_sewing::dump_every_model

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)