motifs.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::motifs

Variables
BooleanOptionKey const	basic::options::OptionKeys::motifs::motifs
RealOptionKey const	basic::options::OptionKeys::motifs::close_enough
IntegerOptionKey const	basic::options::OptionKeys::motifs::max_depth
BooleanOptionKey const	basic::options::OptionKeys::motifs::keep_motif_xtal_location
RealOptionKey const	basic::options::OptionKeys::motifs::pack_score_cutoff
RealOptionKey const	basic::options::OptionKeys::motifs::hb_score_cutoff
RealOptionKey const	basic::options::OptionKeys::motifs::water_score_cutoff
RealOptionKey const	basic::options::OptionKeys::motifs::pack_min_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::pack_max_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::hbond_min_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::hbond_max_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::elec_min_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::elec_max_threshold
RealOptionKey const	basic::options::OptionKeys::motifs::duplicate_dist_cutoff
RealOptionKey const	basic::options::OptionKeys::motifs::duplicate_angle_cutoff
StringOptionKey const	basic::options::OptionKeys::motifs::motif_output_directory
BooleanOptionKey const	basic::options::OptionKeys::motifs::eliminate_weak_motifs
RealOptionKey const	basic::options::OptionKeys::motifs::duplicate_motif_cutoff
BooleanOptionKey const	basic::options::OptionKeys::motifs::preminimize_motif_pdbs
BooleanOptionKey const	basic::options::OptionKeys::motifs::preminimize_motif_pdbs_sconly
BooleanOptionKey const	basic::options::OptionKeys::motifs::place_adduct_waters
FileVectorOptionKey const	basic::options::OptionKeys::motifs::list_motifs
StringOptionKey const	basic::options::OptionKeys::motifs::motif_filename
StringOptionKey const	basic::options::OptionKeys::motifs::file_prefix
StringOptionKey const	basic::options::OptionKeys::motifs::build_residue_file
StringOptionKey const	basic::options::OptionKeys::motifs::motif_flexible_loop_file
StringOptionKey const	basic::options::OptionKeys::motifs::residue_trim_file
StringOptionKey const	basic::options::OptionKeys::motifs::BPData
FileVectorOptionKey const	basic::options::OptionKeys::motifs::list_dnaconformers
StringVectorOptionKey const	basic::options::OptionKeys::motifs::target_dna_defs
StringVectorOptionKey const	basic::options::OptionKeys::motifs::motif_build_defs
IntegerVectorOptionKey const	basic::options::OptionKeys::motifs::motif_build_positions
RealOptionKey const	basic::options::OptionKeys::motifs::r1
RealOptionKey const	basic::options::OptionKeys::motifs::r2
RealOptionKey const	basic::options::OptionKeys::motifs::z1
RealOptionKey const	basic::options::OptionKeys::motifs::z2
RealOptionKey const	basic::options::OptionKeys::motifs::dtest
IntegerOptionKey const	basic::options::OptionKeys::motifs::rotlevel
IntegerOptionKey const	basic::options::OptionKeys::motifs::num_repacks
BooleanOptionKey const	basic::options::OptionKeys::motifs::minimize
BooleanOptionKey const	basic::options::OptionKeys::motifs::minimize_dna
BooleanOptionKey const	basic::options::OptionKeys::motifs::run_motifs
BooleanOptionKey const	basic::options::OptionKeys::motifs::expand_motifs
BooleanOptionKey const	basic::options::OptionKeys::motifs::aromatic_motifs
BooleanOptionKey const	basic::options::OptionKeys::motifs::dump_motifs
BooleanOptionKey const	basic::options::OptionKeys::motifs::quick_and_dirty
RealOptionKey const	basic::options::OptionKeys::motifs::special_rotweight
StringOptionKey const	basic::options::OptionKeys::motifs::output_file
StringOptionKey const	basic::options::OptionKeys::motifs::data_file
StringOptionKey const	basic::options::OptionKeys::motifs::target_aa
BooleanOptionKey const	basic::options::OptionKeys::motifs::flex_sugar
BooleanOptionKey const	basic::options::OptionKeys::motifs::clear_bprots
IntegerOptionKey const	basic::options::OptionKeys::motifs::rots2add
BooleanOptionKey const	basic::options::OptionKeys::motifs::restrict_to_wt
BooleanOptionKey const	basic::options::OptionKeys::motifs::rerun_motifsearch
BooleanOptionKey const	basic::options::OptionKeys::motifs::no_rotamer_bump
RealOptionKey const	basic::options::OptionKeys::motifs::ligand_motif_sphere
BooleanOptionKey const	basic::options::OptionKeys::motifs::output_build_positions_only
RealOptionKey const	basic::options::OptionKeys::motifs::specific_build_position
BooleanOptionKey const	basic::options::OptionKeys::motifs::verbosity
StringOptionKey const	basic::options::OptionKeys::motifs::params_directory_path
StringOptionKey const	basic::options::OptionKeys::motifs::sdf_directory_path
StringOptionKey const	basic::options::OptionKeys::motifs::mol2_directory_path
StringOptionKey const	basic::options::OptionKeys::motifs::mol2_file
StringOptionKey const	basic::options::OptionKeys::motifs::mol2_amino_acid
StringOptionKey const	basic::options::OptionKeys::motifs::params_custom_file_name
StringOptionKey const	basic::options::OptionKeys::motifs::ligand_3_letter_code
StringOptionKey const	basic::options::OptionKeys::motifs::ligand_1_letter_code
StringOptionKey const	basic::options::OptionKeys::motifs::ligand_full_name
BooleanOptionKey const	basic::options::OptionKeys::motifs::write_param_to_pdb
RealOptionKey const	basic::options::OptionKeys::motifs::protein_discovery_locus
RealOptionKey const	basic::options::OptionKeys::motifs::fa_rep_cutoff
RealOptionKey const	basic::options::OptionKeys::motifs::fa_atr_cutoff
BooleanOptionKey const	basic::options::OptionKeys::motifs::output_ligand_pdb
BooleanOptionKey const	basic::options::OptionKeys::motifs::check_new_param_file
RealOptionKey const	basic::options::OptionKeys::motifs::ddg_cutoff
IntegerOptionKey const	basic::options::OptionKeys::motifs::best_pdbs_to_keep
IntegerOptionKey const	basic::options::OptionKeys::motifs::resolution_scale_factor
RealOptionKey const	basic::options::OptionKeys::motifs::x_min_holes
RealOptionKey const	basic::options::OptionKeys::motifs::x_max_holes
RealOptionKey const	basic::options::OptionKeys::motifs::y_min_holes
RealOptionKey const	basic::options::OptionKeys::motifs::y_max_holes
RealOptionKey const	basic::options::OptionKeys::motifs::z_min_holes
RealOptionKey const	basic::options::OptionKeys::motifs::z_max_holes
BooleanOptionKey const	basic::options::OptionKeys::motifs::highresdocker_allow_minimization
BooleanOptionKey const	basic::options::OptionKeys::motifs::highresdocker_allow_repacking
BooleanOptionKey const	basic::options::OptionKeys::motifs::highresdocker_use_all_residues
StringOptionKey const	basic::options::OptionKeys::motifs::ligand_motif_output_directory_name
StringOptionKey const	basic::options::OptionKeys::motifs::ligand_motif_output_file_name
BooleanOptionKey const	basic::options::OptionKeys::motifs::output_motifs_as_pdb
BooleanOptionKey const	basic::options::OptionKeys::motifs::output_motifs

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)