frags.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys
	basic::options::OptionKeys::frags
	basic::options::OptionKeys::frags::scoring
	basic::options::OptionKeys::frags::picking
	basic::options::OptionKeys::frags::nonlocal
	basic::options::OptionKeys::frags::contacts
	basic::options::OptionKeys::frags::ABEGO

Variables
BooleanOptionKey const	basic::options::OptionKeys::frags::frags
IntegerOptionKey const	basic::options::OptionKeys::frags::j
BooleanOptionKey const	basic::options::OptionKeys::frags::filter_JC
BooleanOptionKey const	basic::options::OptionKeys::frags::bounded_protocol
BooleanOptionKey const	basic::options::OptionKeys::frags::keep_all_protocol
BooleanOptionKey const	basic::options::OptionKeys::frags::quota_protocol
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal_pairs
BooleanOptionKey const	basic::options::OptionKeys::frags::fragment_contacts
BooleanOptionKey const	basic::options::OptionKeys::frags::p_value_selection
IntegerOptionKey const	basic::options::OptionKeys::frags::n_frags
FileOptionKey const	basic::options::OptionKeys::frags::allowed_pdb
StringVectorOptionKey const	basic::options::OptionKeys::frags::ss_pred
FileOptionKey const	basic::options::OptionKeys::frags::spine_x
FileOptionKey const	basic::options::OptionKeys::frags::depth
FileOptionKey const	basic::options::OptionKeys::frags::denied_pdb
IntegerVectorOptionKey const	basic::options::OptionKeys::frags::frag_sizes
BooleanOptionKey const	basic::options::OptionKeys::frags::write_ca_coordinates
BooleanOptionKey const	basic::options::OptionKeys::frags::write_scores
BooleanOptionKey const	basic::options::OptionKeys::frags::annotate
IntegerOptionKey const	basic::options::OptionKeys::frags::nr_large_copies
IntegerOptionKey const	basic::options::OptionKeys::frags::n_candidates
BooleanOptionKey const	basic::options::OptionKeys::frags::write_rama_tables
RealOptionKey const	basic::options::OptionKeys::frags::rama_C
RealOptionKey const	basic::options::OptionKeys::frags::rama_B
RealOptionKey const	basic::options::OptionKeys::frags::sigmoid_cs_A
RealOptionKey const	basic::options::OptionKeys::frags::sigmoid_cs_B
RealOptionKey const	basic::options::OptionKeys::frags::seqsim_H
RealOptionKey const	basic::options::OptionKeys::frags::seqsim_E
RealOptionKey const	basic::options::OptionKeys::frags::seqsim_L
RealOptionKey const	basic::options::OptionKeys::frags::rama_norm
StringOptionKey const	basic::options::OptionKeys::frags::describe_fragments
RealOptionKey const	basic::options::OptionKeys::frags::picking_old_max_score
BooleanOptionKey const	basic::options::OptionKeys::frags::write_sequence_only
BooleanOptionKey const	basic::options::OptionKeys::frags::output_silent
BooleanOptionKey const	basic::options::OptionKeys::frags::output_index
BooleanOptionKey const	basic::options::OptionKeys::frags::score_output_silent
BooleanOptionKey const	basic::options::OptionKeys::frags::scoring::scoring
FileOptionKey const	basic::options::OptionKeys::frags::scoring::config
StringOptionKey const	basic::options::OptionKeys::frags::scoring::profile_score
BooleanOptionKey const	basic::options::OptionKeys::frags::picking::picking
StringOptionKey const	basic::options::OptionKeys::frags::picking::selecting_rule
StringOptionKey const	basic::options::OptionKeys::frags::picking::selecting_scorefxn
FileOptionKey const	basic::options::OptionKeys::frags::picking::quota_config_file
IntegerVectorOptionKey const	basic::options::OptionKeys::frags::picking::query_pos
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::nonlocal
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::relax_input
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::relax_input_with_coordinate_constraints
IntegerOptionKey const	basic::options::OptionKeys::frags::nonlocal::relax_frags_repeats
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::single_chain
RealOptionKey const	basic::options::OptionKeys::frags::nonlocal::min_contacts_per_res
RealOptionKey const	basic::options::OptionKeys::frags::nonlocal::max_ddg_score
RealOptionKey const	basic::options::OptionKeys::frags::nonlocal::max_rmsd_after_relax
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::output_frags_pdbs
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::output_idealized
BooleanOptionKey const	basic::options::OptionKeys::frags::nonlocal::output_silent
BooleanOptionKey const	basic::options::OptionKeys::frags::contacts::contacts
IntegerOptionKey const	basic::options::OptionKeys::frags::contacts::min_seq_sep
RealVectorOptionKey const	basic::options::OptionKeys::frags::contacts::dist_cutoffs
RealOptionKey const	basic::options::OptionKeys::frags::contacts::centroid_distance_scale_factor
StringVectorOptionKey const	basic::options::OptionKeys::frags::contacts::type
IntegerOptionKey const	basic::options::OptionKeys::frags::contacts::neighbors
BooleanOptionKey const	basic::options::OptionKeys::frags::contacts::output_all
BooleanOptionKey const	basic::options::OptionKeys::frags::ABEGO::ABEGO
RealOptionKey const	basic::options::OptionKeys::frags::ABEGO::phi_psi_range_A

Detailed Description

basic::options::OptionKeys collection

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)